Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0224
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical...    30   1.3  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    28   5.3  
Z36719-4|CAA85315.2|  513|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>AF040655-12|AAB95039.1|  507|Caenorhabditis elegans Hypothetical
           protein T24E12.1 protein.
          Length = 507

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 113 LPTRCSSLERPSVPVKLINANSPQQDFKHNKPSS 214
           L     +L +P+ PV  +N NSP+     + PSS
Sbjct: 70  LKAEVQALRQPNSPVSKVNMNSPESGISSSSPSS 103


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +2

Query: 20   YERNHPRPALSVHTFSSDAEQREGGIYARPPLPTRCSSLERPSV 151
            YER+ P   L + T SS  EQ    +  RPPLP R  +++ P V
Sbjct: 2616 YERSSP---LLIPTPSSSFEQAST-VPDRPPLPVRLPTVDEPIV 2655


>Z36719-4|CAA85315.2|  513|Caenorhabditis elegans Hypothetical
           protein C06C3.8 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 128 SSLERPSVPVKLINANSPQQDFKHNKPSSLPPHLTKEMPQAVS*TCRI 271
           S+ E P     LI+  +P  D +  K  S+    +KEM Q V+   RI
Sbjct: 425 SNDEHPGAKPTLIHHTTPSLDCQPTKHESIHSDFSKEMDQLVNQATRI 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,998,901
Number of Sequences: 27780
Number of extensions: 175441
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)