Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0224
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.6  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   3.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   3.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/63 (22%), Positives = 29/63 (46%)
 Frame = -1

Query: 306 EGVGAGGGQRSQIRHVHETACGISLVRCGGSDEGLLCLKSCCGEFALISLTGTLGRSKDE 127
           E  G    + +++R++         +  G +++ L   + C G    + + GT  RSK+E
Sbjct: 5   EATGTCQKKPTKLRNLIYKTEAFDSLHAGNAEKTLCSGQVCLGSVMQLPIHGTEPRSKEE 64

Query: 126 HLV 118
            L+
Sbjct: 65  ILL 67


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 96  IPPSLCSASEENVCTL 49
           IP S C++ E N C++
Sbjct: 159 IPASCCNSPENNTCSI 174


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 109 WASINTAFPLLGVRGERV 56
           W S+  A  ++G+R ER+
Sbjct: 807 WTSVKKALMIVGIRPERL 824


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 109 WASINTAFPLLGVRGERV 56
           W S+  A  ++G+R ER+
Sbjct: 845 WTSVKKALMIVGIRPERL 862


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 426 LNCEVFGSEGSLTSVAA 376
           L C++F   GSLT + A
Sbjct: 118 LGCQIFAVIGSLTGIGA 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,647
Number of Sequences: 438
Number of extensions: 2191
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)