Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0224
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    31   0.40 
At4g15730.1 68417.m02394 expressed protein                             29   2.8  
At3g08670.1 68416.m01007 expressed protein                             28   3.7  
At3g59690.1 68416.m06660 calmodulin-binding family protein simil...    28   5.0  
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family...    27   6.5  
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family...    27   6.5  
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa...    27   8.7  

>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
            domain-containing protein similar to eukaryotic protein
            synthesis initiation factor [Homo sapiens] GI:3941724;
            contains Pfam profiles PF02854: MIF4G domain, PF02847:
            MA3 domain
          Length = 1544

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 38   RPALSVHTFSSDAEQREGGIYARPPLPTRCSSLERPSVPVKLINANSPQQ 187
            RPA++ +T+ SDA Q  GG   RP          RP+ PV     +SPQ+
Sbjct: 1259 RPAVASNTYQSDATQAGGGDSRRPAGGLNGFGSHRPASPV-THGRSSPQE 1307


>At4g15730.1 68417.m02394 expressed protein
          Length = 1059

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 149 VPVKLINANSPQQDFKHNKPSSLPPHLTKE-MPQAVS*TCR 268
           VP+   NA +P  D  HNKP  +   +  E + Q+V+  C+
Sbjct: 135 VPINKGNARTPANDLPHNKPIRVRIKMGSEILSQSVAMVCK 175


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +2

Query: 101 ARPPLPTRCSSLERPSVPVKLINANSPQQDFKHNKPSSLPPHLTKEMPQ 247
           ARP  PTR SS  R S P ++   +S     K     S  P      PQ
Sbjct: 204 ARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRPSTPTSRPQ 252


>At3g59690.1 68416.m06660 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 517

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 38  RPALSVHTFSSDAEQREGGIYARPPLPTRCSSLERPSVPVKLINANSPQ 184
           R   S+    S+AE RE  +  RPP PT  ++    SV   L+   SP+
Sbjct: 62  RQPSSIEKILSEAE-REHNLVFRPPTPTDRANSSSTSVASPLVRPASPK 109


>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to hydroxyproline-rich
           glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
          Length = 219

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
 Frame = +2

Query: 11  SAAYERNHPRPALSVHTFSSDAEQREGGIYARPPLPTRCS----SLERPSVPV 157
           +A + R  P PA + H   S         + RPPLP   +     L  PS+PV
Sbjct: 18  TAGHHRRSPPPATTGHHHRSPPPAITACHHRRPPLPATTAGHHRQLRPPSIPV 70


>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 1696

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +2

Query: 107 PPLPTRCSSLERPSVPVKLINANSPQQDFKH---NKPSSLPPHLTKEMP 244
           PP P R S  E P++  +   +N  +QD+ H   +    LPP+     P
Sbjct: 36  PPPPPRQSHPESPNLYGRSTQSNGQRQDYLHQYSHHRQDLPPNTVVNQP 84


>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
           family protein similar to arabinogalactan protein
           [Daucus carota] GI:11322245; contains Pfam profile
           PF01190: Pollen proteins Ole e I family
          Length = 359

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 6   PYQPPTKGTILVPLSAYTRSPRTP 77
           P  PPTK  +  P+S  T+ P TP
Sbjct: 195 PVYPPTKAPVKPPVSPPTKPPVTP 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,740,630
Number of Sequences: 28952
Number of extensions: 178494
Number of successful extensions: 613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)