Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0223
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)             138   4e-33
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.79 
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)          31   1.4  
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)                 30   1.8  
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)                     30   2.4  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)                29   3.2  
SB_51968| Best HMM Match : PT (HMM E-Value=0.54)                       29   3.2  
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)           29   3.2  
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)                   29   4.2  
SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069)                   29   5.5  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)                 29   5.5  
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)                   28   7.3  
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)                    28   7.3  
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)                    28   7.3  
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)                     28   7.3  

>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score =  138 bits (335), Expect = 4e-33
 Identities = 71/87 (81%), Positives = 77/87 (88%)
 Frame = +2

Query: 254 AGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 433
           AGIIAIYGLVVAVLI  ++ +  +Y LYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVR
Sbjct: 61  AGIIAIYGLVVAVLIGSSISK--DYTLYKSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVR 118

Query: 434 GTAQQPRLFVGMILILIFAEVLGLYDL 514
           GTAQQPRLFVGMILILIFAEVLGLY L
Sbjct: 119 GTAQQPRLFVGMILILIFAEVLGLYGL 145



 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 47/56 (83%), Positives = 51/56 (91%)
 Frame = +3

Query: 87  NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM 254
           + P Y  FFGVMGA +A++FSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM
Sbjct: 5   DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM 60


>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 356 GAGLAVGFSGLAAGFAIGIVG 418
           GAG+ VGF  LA G  +G+VG
Sbjct: 46  GAGMTVGFCNLACGICVGLVG 66


>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
          Length = 295

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 477 IRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAP 355
           ++I+P N +     PR P + T P   P   P  PT  P P
Sbjct: 205 VKILPGNGVVPTQAPRPPTTQTPPTKAPTDPPVPPTNPPVP 245


>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 403 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 272
           G+   +T  SYS  S+QV +PF    V        +QD H+QT+
Sbjct: 713 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQPIKQHQDKHNQTL 756



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 403 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 272
           G+   +T  SYS  S+QV +PF    V        +QD H+QT+
Sbjct: 44  GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQLIKQHQDKHNQTL 87


>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
          Length = 1155

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 429  TPASPTMPMAKPAARPENPTAKPAPKWMNPL 337
            TPA PT+PMA   A  + P+  PA     PL
Sbjct: 1095 TPALPTIPMAPSGAPAKTPSVAPAAPSPRPL 1125


>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
          Length = 439

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = -1

Query: 437 YHARLHLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPGGHQQSGQ--PRPDRRW 267
           YHA+  + +C    ++P   +L   Q  S    C       PGGHQ   Q   R   RW
Sbjct: 264 YHAKNQVVKCYQPGKEPGGHLLPTYQAKSQAVKCYYIPGKEPGGHQAKNQAVTRQRTRW 322


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 422  HLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPG-GHQQSGQ 288
            ++   +++  Q +Q +L  NQ PS  T+  GGS    G GH   GQ
Sbjct: 2347 YVSHTVFKREQDEQLLLWLNQRPSDWTMTWGGSGTIYGWGHNHRGQ 2392


>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
          Length = 156

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 426 PASPTMPMAKPAARPENPTAKPAPK 352
           PA+P  P A PAA P  PTA PA +
Sbjct: 52  PAAPVTPTAAPAA-PVTPTAAPAAR 75



 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3

Query: 426 PASPTMPMAKPAARPENPTAKPA 358
           PA+P  P A PAAR   PTA PA
Sbjct: 62  PAAPVTPTAAPAAR-VTPTAAPA 83


>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
          Length = 514

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -3

Query: 504 RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNPL 337
           +P T+ K R    PT +L      +   +PT   AKP      PT +P  K   PL
Sbjct: 135 KPKTTVKRRPTERPTKSLLPEEEEKERQTPTPTKAKPTTIKRRPTERPTKKPTKPL 190


>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
          Length = 404

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 426 PASPTMPMAKPAARPENPTAKPAPK 352
           PA+P  P A PAA P  PTA PA +
Sbjct: 209 PAAPVTPTAAPAA-PVTPTAAPAAR 232



 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3

Query: 426 PASPTMPMAKPAARPENPTAKPA 358
           PA+P  P A PAAR   PTA PA
Sbjct: 219 PAAPVTPTAAPAAR-VTPTAAPA 240


>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
          Length = 233

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 465 PTNNLGC*AVPRTPASP--TMPMAKPAARPENPTAKPAP 355
           P+NN G  A P TPA+P   M +A P+      T  P P
Sbjct: 87  PSNNFGTPATPATPATPAHNMGVAGPSGMATPGTFIPPP 125


>SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069)
          Length = 466

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/28 (60%), Positives = 18/28 (64%)
 Frame = +1

Query: 91  IQSTDPSLELWGRRLLSSSAPWELPMEL 174
           I S D  LELWG R LS+SA   LP EL
Sbjct: 355 ILSGDFYLELWGARELSNSALNFLPAEL 382


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -3

Query: 438  VPRTPAS-PTMPMAKPAARPENPTAKPAPKWMNP 340
            +P TP   P  P   P  RP  PT +P P    P
Sbjct: 1354 IPSTPRPRPPTPPRPPTPRPRPPTPRPGPPTPRP 1387


>SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)
          Length = 346

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -3

Query: 522 GDDKS*RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPA 358
           GD +  +P+   K+  R+         A  +TPA+ T P   PAA    PTA PA
Sbjct: 262 GDQQEAKPDEDGKLAFRLFDRFMR---AQRKTPAATTPPTGSPAATTP-PTAAPA 312


>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 346

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 429 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 337
           TPA PT+P A   A  + P+  PA     PL
Sbjct: 286 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 316


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 305  HQQSGQPRPDRRWQ*YPHDDRNDRLHDQLRPHH 207
            H Q  Q R D++ Q   HD +  + HDQ + HH
Sbjct: 1110 HDQQQQQRHDQQQQ--HHDQQQQQHHDQQQQHH 1140


>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
          Length = 347

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 429 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 337
           TPA PT+P A   A  + P+  PA     PL
Sbjct: 290 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 320


>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
          Length = 1026

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 429  TPASPTMPMAKPAARPENPTAKPAPKWMNPL 337
            TPA PT+P A   A  + P+  PA     PL
Sbjct: 966  TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 996


>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
          Length = 355

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 462 TNNLGC*AVPRTPASPTMPMAKPA--ARPENPTAKPAPKWMNP 340
           +NN G  A P TPA+  +P+A P+  A P   T  PAP +  P
Sbjct: 220 SNNFGTPATPATPAN-GVPIAGPSGMATPGAFTPPPAPVFTPP 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,232,367
Number of Sequences: 59808
Number of extensions: 641657
Number of successful extensions: 1934
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1928
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)