Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0223
(776 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M62762-1|AAA60039.1| 155|Homo sapiens vacuolar H+ ATPase proton... 138 2e-32
CR541951-1|CAG46749.1| 155|Homo sapiens ATP6V0C protein. 138 2e-32
CR541930-1|CAG46728.1| 155|Homo sapiens ATP6V0C protein. 138 2e-32
BT007155-1|AAP35819.1| 155|Homo sapiens ATPase, H+ transporting... 138 2e-32
BC009290-1|AAH09290.1| 155|Homo sapiens ATPase, H+ transporting... 138 2e-32
BC007759-1|AAH07759.1| 155|Homo sapiens ATPase, H+ transporting... 138 2e-32
BC007389-1|AAH07389.1| 155|Homo sapiens ATPase, H+ transporting... 138 2e-32
BC004537-1|AAH04537.1| 155|Homo sapiens ATPase, H+ transporting... 138 2e-32
D89052-1|BAA13753.1| 205|Homo sapiens proton-ATPase-like protei... 60 7e-09
CR456972-1|CAG33253.1| 205|Homo sapiens ATP6V0B protein. 60 7e-09
BT007151-1|AAP35815.1| 205|Homo sapiens ATPase, H+ transporting... 60 7e-09
BC005876-1|AAH05876.1| 205|Homo sapiens ATPase, H+ transporting... 60 7e-09
BC000423-1|AAH00423.1| 205|Homo sapiens ATPase, H+ transporting... 60 7e-09
AL357079-17|CAI16801.1| 205|Homo sapiens ATPase, H+ transportin... 60 7e-09
D37766-1|BAA22263.1| 1172|Homo sapiens Laminin-5 beta3 chain pro... 33 0.87
DQ846849-1|ABI15201.1| 111|Homo sapiens dopamine D4 receptor pr... 31 3.5
>M62762-1|AAA60039.1| 155|Homo sapiens vacuolar H+ ATPase proton
channel subunit protein.
Length = 155
Score = 138 bits (335), Expect = 2e-32
Identities = 72/87 (82%), Positives = 77/87 (88%)
Frame = +2
Query: 254 AGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 433
AGIIAIYGLVVAVLIA +L + + LYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVR
Sbjct: 62 AGIIAIYGLVVAVLIANSLNDDIS--LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119
Query: 434 GTAQQPRLFVGMILILIFAEVLGLYDL 514
GTAQQPRLFVGMILILIFAEVLGLY L
Sbjct: 120 GTAQQPRLFVGMILILIFAEVLGLYGL 146
Score = 94.7 bits (225), Expect = 3e-19
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = +3
Query: 81 AENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM 254
+++ P Y FF VMGA++A++FSALGAAYGTAKSGTGIAAMSVMRPE IMKSIIPVVM
Sbjct: 4 SKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVM 61
>CR541951-1|CAG46749.1| 155|Homo sapiens ATP6V0C protein.
Length = 155
Score = 138 bits (335), Expect = 2e-32
Identities = 72/87 (82%), Positives = 77/87 (88%)
Frame = +2
Query: 254 AGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 433
AGIIAIYGLVVAVLIA +L + + LYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVR
Sbjct: 62 AGIIAIYGLVVAVLIANSLNDDIS--LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119
Query: 434 GTAQQPRLFVGMILILIFAEVLGLYDL 514
GTAQQPRLFVGMILILIFAEVLGLY L
Sbjct: 120 GTAQQPRLFVGMILILIFAEVLGLYGL 146
Score = 94.7 bits (225), Expect = 3e-19
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = +3
Query: 81 AENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM 254
+++ P Y FF VMGA++A++FSALGAAYGTAKSGTGIAAMSVMRPE IMKSIIPVVM
Sbjct: 4 SKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVM 61
>CR541930-1|CAG46728.1| 155|Homo sapiens ATP6V0C protein.
Length = 155
Score = 138 bits (335), Expect = 2e-32
Identities = 72/87 (82%), Positives = 77/87 (88%)
Frame = +2
Query: 254 AGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 433
AGIIAIYGLVVAVLIA +L + + LYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVR
Sbjct: 62 AGIIAIYGLVVAVLIANSLNDDIS--LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119
Query: 434 GTAQQPRLFVGMILILIFAEVLGLYDL 514
GTAQQPRLFVGMILILIFAEVLGLY L
Sbjct: 120 GTAQQPRLFVGMILILIFAEVLGLYGL 146
Score = 94.7 bits (225), Expect = 3e-19
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = +3
Query: 81 AENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM 254
+++ P Y FF VMGA++A++FSALGAAYGTAKSGTGIAAMSVMRPE IMKSIIPVVM
Sbjct: 4 SKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVM 61
>BT007155-1|AAP35819.1| 155|Homo sapiens ATPase, H+ transporting,
lysosomal 16kDa, V0 subunit c protein.
Length = 155
Score = 138 bits (335), Expect = 2e-32
Identities = 72/87 (82%), Positives = 77/87 (88%)
Frame = +2
Query: 254 AGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 433
AGIIAIYGLVVAVLIA +L + + LYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVR
Sbjct: 62 AGIIAIYGLVVAVLIANSLNDDIS--LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119
Query: 434 GTAQQPRLFVGMILILIFAEVLGLYDL 514
GTAQQPRLFVGMILILIFAEVLGLY L
Sbjct: 120 GTAQQPRLFVGMILILIFAEVLGLYGL 146
Score = 94.7 bits (225), Expect = 3e-19
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = +3
Query: 81 AENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM 254
+++ P Y FF VMGA++A++FSALGAAYGTAKSGTGIAAMSVMRPE IMKSIIPVVM
Sbjct: 4 SKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVM 61
>BC009290-1|AAH09290.1| 155|Homo sapiens ATPase, H+ transporting,
lysosomal 16kDa, V0 subunit c protein.
Length = 155
Score = 138 bits (335), Expect = 2e-32
Identities = 72/87 (82%), Positives = 77/87 (88%)
Frame = +2
Query: 254 AGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 433
AGIIAIYGLVVAVLIA +L + + LYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVR
Sbjct: 62 AGIIAIYGLVVAVLIANSLNDDIS--LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119
Query: 434 GTAQQPRLFVGMILILIFAEVLGLYDL 514
GTAQQPRLFVGMILILIFAEVLGLY L
Sbjct: 120 GTAQQPRLFVGMILILIFAEVLGLYGL 146
Score = 94.7 bits (225), Expect = 3e-19
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = +3
Query: 81 AENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM 254
+++ P Y FF VMGA++A++FSALGAAYGTAKSGTGIAAMSVMRPE IMKSIIPVVM
Sbjct: 4 SKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVM 61
>BC007759-1|AAH07759.1| 155|Homo sapiens ATPase, H+ transporting,
lysosomal 16kDa, V0 subunit c protein.
Length = 155
Score = 138 bits (335), Expect = 2e-32
Identities = 72/87 (82%), Positives = 77/87 (88%)
Frame = +2
Query: 254 AGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 433
AGIIAIYGLVVAVLIA +L + + LYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVR
Sbjct: 62 AGIIAIYGLVVAVLIANSLNDDIS--LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119
Query: 434 GTAQQPRLFVGMILILIFAEVLGLYDL 514
GTAQQPRLFVGMILILIFAEVLGLY L
Sbjct: 120 GTAQQPRLFVGMILILIFAEVLGLYGL 146
Score = 94.7 bits (225), Expect = 3e-19
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = +3
Query: 81 AENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM 254
+++ P Y FF VMGA++A++FSALGAAYGTAKSGTGIAAMSVMRPE IMKSIIPVVM
Sbjct: 4 SKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVM 61
>BC007389-1|AAH07389.1| 155|Homo sapiens ATPase, H+ transporting,
lysosomal 16kDa, V0 subunit c protein.
Length = 155
Score = 138 bits (335), Expect = 2e-32
Identities = 72/87 (82%), Positives = 77/87 (88%)
Frame = +2
Query: 254 AGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 433
AGIIAIYGLVVAVLIA +L + + LYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVR
Sbjct: 62 AGIIAIYGLVVAVLIANSLNDDIS--LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119
Query: 434 GTAQQPRLFVGMILILIFAEVLGLYDL 514
GTAQQPRLFVGMILILIFAEVLGLY L
Sbjct: 120 GTAQQPRLFVGMILILIFAEVLGLYGL 146
Score = 94.7 bits (225), Expect = 3e-19
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = +3
Query: 81 AENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM 254
+++ P Y FF VMGA++A++FSALGAAYGTAKSGTGIAAMSVMRPE IMKSIIPVVM
Sbjct: 4 SKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVM 61
>BC004537-1|AAH04537.1| 155|Homo sapiens ATPase, H+ transporting,
lysosomal 16kDa, V0 subunit c protein.
Length = 155
Score = 138 bits (335), Expect = 2e-32
Identities = 72/87 (82%), Positives = 77/87 (88%)
Frame = +2
Query: 254 AGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 433
AGIIAIYGLVVAVLIA +L + + LYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVR
Sbjct: 62 AGIIAIYGLVVAVLIANSLNDDIS--LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119
Query: 434 GTAQQPRLFVGMILILIFAEVLGLYDL 514
GTAQQPRLFVGMILILIFAEVLGLY L
Sbjct: 120 GTAQQPRLFVGMILILIFAEVLGLYGL 146
Score = 94.7 bits (225), Expect = 3e-19
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = +3
Query: 81 AENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM 254
+++ P Y FF VMGA++A++FSALGAAYGTAKSGTGIAAMSVMRPE IMKSIIPVVM
Sbjct: 4 SKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVM 61
>D89052-1|BAA13753.1| 205|Homo sapiens proton-ATPase-like protein
protein.
Length = 205
Score = 60.5 bits (140), Expect = 7e-09
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Frame = +2
Query: 263 IAIYGLVVAVLIAGALQEP--ANYP-------LYKGFIHLGAGLAVGFSGLAAGFAIGIV 415
+AIYG+++A++I+ + EP A P + G+ GAGL VG S L G +GIV
Sbjct: 100 VAIYGIIMAIVISN-MAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIV 158
Query: 416 GDAGVRGTAQQPRLFVGMILILIFAEVLGLY 508
G AQ P LFV ++++ IF +GL+
Sbjct: 159 GSGAALADAQNPSLFVKILIVEIFGSAIGLF 189
Score = 37.5 bits (83), Expect = 0.053
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 350 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYDL 514
+LG GLA+ S + A + I I G + + G + PR+ ++ +IF E + +Y +
Sbjct: 51 NLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGI 105
>CR456972-1|CAG33253.1| 205|Homo sapiens ATP6V0B protein.
Length = 205
Score = 60.5 bits (140), Expect = 7e-09
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Frame = +2
Query: 263 IAIYGLVVAVLIAGALQEP--ANYP-------LYKGFIHLGAGLAVGFSGLAAGFAIGIV 415
+AIYG+++A++I+ + EP A P + G+ GAGL VG S L G +GIV
Sbjct: 100 VAIYGIIMAIVISN-MAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIV 158
Query: 416 GDAGVRGTAQQPRLFVGMILILIFAEVLGLY 508
G AQ P LFV ++++ IF +GL+
Sbjct: 159 GSGAALADAQNPSLFVKILIVEIFGSAIGLF 189
Score = 37.5 bits (83), Expect = 0.053
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 350 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYDL 514
+LG GLA+ S + A + I I G + + G + PR+ ++ +IF E + +Y +
Sbjct: 51 NLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGI 105
>BT007151-1|AAP35815.1| 205|Homo sapiens ATPase, H+ transporting,
lysosomal 21kDa, V0 subunit c'' protein.
Length = 205
Score = 60.5 bits (140), Expect = 7e-09
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Frame = +2
Query: 263 IAIYGLVVAVLIAGALQEP--ANYP-------LYKGFIHLGAGLAVGFSGLAAGFAIGIV 415
+AIYG+++A++I+ + EP A P + G+ GAGL VG S L G +GIV
Sbjct: 100 VAIYGIIMAIVISN-MAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIV 158
Query: 416 GDAGVRGTAQQPRLFVGMILILIFAEVLGLY 508
G AQ P LFV ++++ IF +GL+
Sbjct: 159 GSGAALADAQNPSLFVKILIVEIFGSAIGLF 189
Score = 37.5 bits (83), Expect = 0.053
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 350 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYDL 514
+LG GLA+ S + A + I I G + + G + PR+ ++ +IF E + +Y +
Sbjct: 51 NLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGI 105
>BC005876-1|AAH05876.1| 205|Homo sapiens ATPase, H+ transporting,
lysosomal 21kDa, V0 subunit b protein.
Length = 205
Score = 60.5 bits (140), Expect = 7e-09
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Frame = +2
Query: 263 IAIYGLVVAVLIAGALQEP--ANYP-------LYKGFIHLGAGLAVGFSGLAAGFAIGIV 415
+AIYG+++A++I+ + EP A P + G+ GAGL VG S L G +GIV
Sbjct: 100 VAIYGIIMAIVISN-MAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIV 158
Query: 416 GDAGVRGTAQQPRLFVGMILILIFAEVLGLY 508
G AQ P LFV ++++ IF +GL+
Sbjct: 159 GSGAALADAQNPSLFVKILIVEIFGSAIGLF 189
Score = 37.5 bits (83), Expect = 0.053
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 350 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYDL 514
+LG GLA+ S + A + I I G + + G + PR+ ++ +IF E + +Y +
Sbjct: 51 NLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGI 105
>BC000423-1|AAH00423.1| 205|Homo sapiens ATPase, H+ transporting,
lysosomal 21kDa, V0 subunit b protein.
Length = 205
Score = 60.5 bits (140), Expect = 7e-09
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Frame = +2
Query: 263 IAIYGLVVAVLIAGALQEP--ANYP-------LYKGFIHLGAGLAVGFSGLAAGFAIGIV 415
+AIYG+++A++I+ + EP A P + G+ GAGL VG S L G +GIV
Sbjct: 100 VAIYGIIMAIVISN-MAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIV 158
Query: 416 GDAGVRGTAQQPRLFVGMILILIFAEVLGLY 508
G AQ P LFV ++++ IF +GL+
Sbjct: 159 GSGAALADAQNPSLFVKILIVEIFGSAIGLF 189
Score = 37.5 bits (83), Expect = 0.053
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 350 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYDL 514
+LG GLA+ S + A + I I G + + G + PR+ ++ +IF E + +Y +
Sbjct: 51 NLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGI 105
>AL357079-17|CAI16801.1| 205|Homo sapiens ATPase, H+ transporting,
lysosomal 21kDa, V0 subunit b protein.
Length = 205
Score = 60.5 bits (140), Expect = 7e-09
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
Frame = +2
Query: 263 IAIYGLVVAVLIAGALQEP--ANYP-------LYKGFIHLGAGLAVGFSGLAAGFAIGIV 415
+AIYG+++A++I+ + EP A P + G+ GAGL VG S L G +GIV
Sbjct: 100 VAIYGIIMAIVISN-MAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIV 158
Query: 416 GDAGVRGTAQQPRLFVGMILILIFAEVLGLY 508
G AQ P LFV ++++ IF +GL+
Sbjct: 159 GSGAALADAQNPSLFVKILIVEIFGSAIGLF 189
Score = 37.5 bits (83), Expect = 0.053
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +2
Query: 350 HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYDL 514
+LG GLA+ S + A + I I G + + G + PR+ ++ +IF E + +Y +
Sbjct: 51 NLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGI 105
>D37766-1|BAA22263.1| 1172|Homo sapiens Laminin-5 beta3 chain
protein.
Length = 1172
Score = 33.5 bits (73), Expect = 0.87
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 259 YYCHLRSGRGCPDCWCPPGASQLPPLQRVH 348
Y+ L SG+GC C C P S P +Q VH
Sbjct: 468 YHWKLASGQGCEPCACDPHNSPQPTVQPVH 497
>DQ846849-1|ABI15201.1| 111|Homo sapiens dopamine D4 receptor
protein.
Length = 111
Score = 31.5 bits (68), Expect = 3.5
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -3
Query: 504 RPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPA--ARPENPTAKPAPKWMNP 340
RP A R PT A PRTPA+PT+ +PA P PT +P P+ +P
Sbjct: 31 RPPRPASPRTPAAPTVRPPRPASPRTPAAPTVRPPRPAFPGVPAAPTVRP-PRPASP 86
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,229,626
Number of Sequences: 237096
Number of extensions: 3235445
Number of successful extensions: 13892
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13806
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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