Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0223
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   161   7e-42
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.7  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  161 bits (391), Expect = 7e-42
 Identities = 79/87 (90%), Positives = 82/87 (94%)
 Frame = +2

Query: 254 AGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 433
           AGIIAIYGLVVAVLIAG L+EP  Y L+KGF+HLGAGLAVGFSGLAAGFAIGIVGDAGVR
Sbjct: 61  AGIIAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVR 120

Query: 434 GTAQQPRLFVGMILILIFAEVLGLYDL 514
           GTAQQPRLFVGMILILIFAEVLGLY L
Sbjct: 121 GTAQQPRLFVGMILILIFAEVLGLYGL 147



 Score =  111 bits (266), Expect = 9e-27
 Identities = 54/57 (94%), Positives = 56/57 (98%)
 Frame = +3

Query: 84  ENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM 254
           E++PIY PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM
Sbjct: 4   EDHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVM 60


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 82  LKIIQSTDPSLELWGRRLLSSS 147
           + I + TDP  E W RR L  S
Sbjct: 142 MTITELTDPVKEFWERRALQIS 163


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 770 HVSDAEQPQQQ 738
           HV +A+QPQQQ
Sbjct: 433 HVINAQQPQQQ 443


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 1   VSWSECVQIVITVFGTCKYSH 63
           +SW E +QI + V    +Y H
Sbjct: 694 LSWLERIQIALDVLEGIRYLH 714


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 1   VSWSECVQIVITVFGTCKYSH 63
           +SW E +QI + V    +Y H
Sbjct: 732 LSWLERIQIALDVLEGIRYLH 752


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,306
Number of Sequences: 438
Number of extensions: 5460
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)