Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0221
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   2.9  
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   5.1  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   6.8  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    26   6.8  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    25   9.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.0  

>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 70  GFKPSGSLSRDLDLHQGKHSDGYRPRKEQR 159
           GFKP+G  + D    Q K++  Y   K+QR
Sbjct: 761 GFKPAGETADDKPEPQTKNAHAYNVAKQQR 790


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 280 NPIKDSTYTFLQELFHEVQALFPDRYIHIGGDEVD-LDCWESNPEFQRYIQE 432
           N IK+   T + EL+ EV  +F +  ++ G D  + +  W    E  RY +E
Sbjct: 237 NMIKEGNITEVDELYREVLRIFANCKMYNGSDPANAMSIW--GDECFRYTEE 286


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
 Frame = +1

Query: 307 FLQELFHEVQALFPDRYIH--IGG-DEVDLDCWESNPEFQRYI 426
           F++ +  ++  +F +R +   IGG  +VD++ W+S+ E++ YI
Sbjct: 644 FVELVSPDLVNVFDERELELLIGGISDVDVEDWKSHTEYRTYI 686


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 360 NVSIRKQGLDLMKQFLQEGVCAVLDWVHRTETHV 259
           NV +  QGLD ++Q L+E     L   H TET V
Sbjct: 198 NVRVVFQGLDRLEQVLKESKGPFLLGDHLTETDV 231


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 328 EVQALFPDRYIHIGGDEVD 384
           E++++ PD+  HI GD VD
Sbjct: 189 EIRSVPPDQLFHIAGDAVD 207


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 229 EVGFGYTP-GPCVTGYIEFRNNPDPSVPCVVDNRLNVFLGVNQGLV 95
           ++GF  T     VT   E RN  DP+ P    +R  +FLG    L+
Sbjct: 54  KIGFQATNLHDAVTIINEMRNWRDPNPPEEKSDRATIFLGYTSNLI 99


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -1

Query: 686 PSSRLQCSDDQGTSQWNRLTGDLLLGYSTFQEL-RFPST 573
           P+S   C+    T QW  L  D+  G S F    RFP T
Sbjct: 75  PTSPDSCTFGNMTFQWTSLLQDVFSGTSAFAIFKRFPLT 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,485
Number of Sequences: 5004
Number of extensions: 76802
Number of successful extensions: 221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)