Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0221
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1000 - 23220878-23221821,23222164-23223001 97 1e-20
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 83 3e-16
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 80 2e-15
03_02_0187 - 6248226-6249226,6249296-6250148 79 5e-15
05_04_0177 + 18770409-18770897 46 3e-05
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 41 0.001
02_04_0596 + 24195863-24196179,24196257-24196359 29 4.1
09_02_0433 + 9346464-9347304,9347848-9348470,9348578-9349282 29 5.4
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 28 7.1
05_06_0037 + 25095452-25096049,25097093-25097280,25097926-25098429 28 9.4
04_04_1080 - 30674122-30674204,30674842-30674913,30675261-306753... 28 9.4
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 97.5 bits (232), Expect = 1e-20
Identities = 39/78 (50%), Positives = 55/78 (70%)
Frame = +2
Query: 2 KMNVFHWHIVDDQSFPYQSERFPDLSRLGAYHETLIYTKENIQTVIDHARNRGIRVIPEF 181
KMNVFHWHI D QSFP + P L+ G+Y + + YT ++++ ++D A NRG+RV+PE
Sbjct: 217 KMNVFHWHITDSQSFPLELPSEPALAEKGSYGDGMRYTVDDVKLIVDFAMNRGVRVVPEI 276
Query: 182 DVPGHTRSWGVAKPDLLT 235
D PGHT SW A P+L++
Sbjct: 277 DTPGHTASWAGAYPELVS 294
Score = 60.9 bits (141), Expect = 1e-09
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +1
Query: 265 GLGPMNPIKDSTYTFLQELFHEVQALFPDRYIHIGGDEVDLDCWESNPEFQRYI 426
G G +NP++ TY + + ++V +LFPD + H G DEV CW ++P QRY+
Sbjct: 316 GAGQLNPLEPKTYQVMSNVINDVTSLFPDGFYHAGADEVTPGCWNADPSIQRYL 369
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 82.6 bits (195), Expect = 3e-16
Identities = 36/76 (47%), Positives = 48/76 (63%)
Frame = +2
Query: 2 KMNVFHWHIVDDQSFPYQSERFPDLSRLGAYHETLIYTKENIQTVIDHARNRGIRVIPEF 181
K+NV HWHIVD+QSFP + +P L GAY + YT ++ ++ +A RG+ V+ E
Sbjct: 202 KLNVLHWHIVDEQSFPIEIPSYPKLWN-GAYSYSERYTMDDAIDIVQYAERRGVNVLAEI 260
Query: 182 DVPGHTRSWGVAKPDL 229
DVPGH SWGV P L
Sbjct: 261 DVPGHALSWGVGYPSL 276
Score = 48.8 bits (111), Expect = 5e-06
Identities = 15/56 (26%), Positives = 33/56 (58%)
Frame = +1
Query: 274 PMNPIKDSTYTFLQELFHEVQALFPDRYIHIGGDEVDLDCWESNPEFQRYIQEHNL 441
P++ +ST+ + + + +F +++H+GGDEV+ CW S P + ++ +H +
Sbjct: 285 PLDVSSESTFQVINGILSDFSKVFKFKFVHLGGDEVNTSCWTSTPRVKAWLAQHGM 340
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 80.2 bits (189), Expect = 2e-15
Identities = 36/76 (47%), Positives = 47/76 (61%)
Frame = +2
Query: 2 KMNVFHWHIVDDQSFPYQSERFPDLSRLGAYHETLIYTKENIQTVIDHARNRGIRVIPEF 181
K+NV HWHIVD QSFP + +P L G+Y + YT + ++ +A NRG+ V+ E
Sbjct: 195 KLNVLHWHIVDAQSFPIEIPSYPKLWN-GSYSFSERYTTSDAVDIVRYAENRGVNVMAEI 253
Query: 182 DVPGHTRSWGVAKPDL 229
DVPGH SWGV P L
Sbjct: 254 DVPGHALSWGVGYPSL 269
Score = 46.0 bits (104), Expect = 3e-05
Identities = 16/67 (23%), Positives = 39/67 (58%)
Frame = +1
Query: 274 PMNPIKDSTYTFLQELFHEVQALFPDRYIHIGGDEVDLDCWESNPEFQRYIQEHNLTSVA 453
P++ + T+ + + + +F +++H+GGDEV+ CW + P ++++ + N +V+
Sbjct: 278 PLDVSNNFTFGVIDGILSDFSKVFKFKFVHLGGDEVNTSCWTATPHIKKWLDD-NQMNVS 336
Query: 454 DFHALFM 474
D + F+
Sbjct: 337 DAYRYFV 343
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 560 TIVQVWK-ENEAPEMLNILRASHQLIYSTG--WYLDHLNTGGDWTEFFNKDPRDLVNGLS 730
T+V W E+ AP+ ++ A + I S WYLDHL+ W F+ +P + G+
Sbjct: 375 TVVHNWLGEDVAPK---VVAAGLRCIVSNQDKWYLDHLD--ATWEGFYTNEP---LKGID 426
Query: 731 KDINVDNIVGG 763
++GG
Sbjct: 427 DPEQQSLVIGG 437
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 78.6 bits (185), Expect = 5e-15
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 12/90 (13%)
Frame = +2
Query: 2 KMNVFHWHIVDDQSFPYQSERFPDLSRLGAYHETLIYTKENIQTVIDHARNRGIRVIPEF 181
K+NVFHWHI D QSFP P+L+ G+Y T+ YT+ +++ ++ A + GIRVIPE
Sbjct: 222 KLNVFHWHITDAQSFPIVLPTVPNLANSGSYSPTMRYTENDVRHIVSFAASFGIRVIPEI 281
Query: 182 DVP------------GHTRSWGVAKPDLLT 235
D+P GHT SW A P+++T
Sbjct: 282 DMPVYSRLSVARFGSGHTGSWAGAYPEIVT 311
Score = 66.1 bits (154), Expect = 3e-11
Identities = 30/83 (36%), Positives = 46/83 (55%)
Frame = +1
Query: 265 GLGPMNPIKDSTYTFLQELFHEVQALFPDRYIHIGGDEVDLDCWESNPEFQRYIQEHNLT 444
G G +NP+ TY Q++ ++ ALFPD Y+H G DEV+ CWE +P +R++ E
Sbjct: 330 GTGQLNPLNPKTYRVAQDVLRDMVALFPDPYLHGGADEVNTACWEDDPVVRRFLAEGGTH 389
Query: 445 SVADFHALFMRNTIPLLSENSNR 513
LF+ T P +++ NR
Sbjct: 390 D--HLLELFINATRPFVAQELNR 410
>05_04_0177 + 18770409-18770897
Length = 162
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +1
Query: 337 ALFPDRYIHIGGDEVDLDCWESNPEFQRYIQEHNLTSVADFHALFMRNTIPLLSENSNR 513
ALFPD Y+H G DEV+ CWE++P +R++ E + +F+ T P +++ N+
Sbjct: 3 ALFPDPYLHGGTDEVNTACWENDPVVRRFLAEGGTHN--HLLEVFINTTRPFVAQELNQ 59
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 274 PMNPIKDSTYTFLQELFHEVQALFPDRYIHIGGDEVDLDCWESNPEFQRYIQEHN 438
P++ + T+ + + +++ +FP H+GGDEV CW + P +++ + N
Sbjct: 293 PLDVTSNFTFEVISGILSDMRKIFPFGLFHLGGDEVYTGCWNATPHVKQWEETFN 347
Score = 35.1 bits (77), Expect = 0.062
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +2
Query: 158 GIRVIPEFDVPGHTRSWGVAKPDL 229
GI V+ E DVPGH SWG P L
Sbjct: 261 GIHVMAEIDVPGHAESWGKGYPKL 284
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 647 WYLDHLNTGGDWTEFFNKDPRDLVNGLSK 733
WYLDHL+ W +F+ +P +N ++
Sbjct: 386 WYLDHLDV--PWQDFYTSEPLAGINNTAQ 412
>02_04_0596 + 24195863-24196179,24196257-24196359
Length = 139
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = -3
Query: 627 W*LALRIFNISGASFSFHTCTIVSSEGARLHRKLPATLSVRVFAEQRNRVA 475
W A R+ I+ F+ H +SS+ LHR+LP TL V +A R A
Sbjct: 79 WPAAARLIAINEGIFALH----LSSDRFFLHRRLPVTLGVMGWAHAAVRRA 125
>09_02_0433 + 9346464-9347304,9347848-9348470,9348578-9349282
Length = 722
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 480 VAHE*SVKISYRSQVVLLYVSLEFWIR 400
VAH+ ++ I S VVLL ++EFW++
Sbjct: 647 VAHKTAIAICVLSPVVLLSKNMEFWVK 673
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 653 LDHLNTGGDWTEFFNKDPRDLVNGLSKDI 739
+++L+ G +W FF + L NG+S+DI
Sbjct: 2179 VEYLDRGSEWATFFLSLKKYLDNGVSRDI 2207
>05_06_0037 + 25095452-25096049,25097093-25097280,25097926-25098429
Length = 429
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 388 DCWESNPEF--QRYIQEHNLTSVADFHALFMRNTIPLLSENSNR*CGRKFSMKACPFRRH 561
+ W P F +RY + L+ HAL M + +P LS+ C S +AC ++ +
Sbjct: 184 ETWLDFPLFISERYADDFELSDAQYVHALSMEHLVPSLSDIKAAICSTDMS-EACFWKIY 242
Query: 562 Y 564
+
Sbjct: 243 F 243
>04_04_1080 -
30674122-30674204,30674842-30674913,30675261-30675324,
30676358-30676394,30676562-30676675,30676791-30677002,
30677180-30677335,30677556-30678443
Length = 541
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +1
Query: 376 EVDLDCWESNPEFQRYIQEHNLTS 447
++D D + +PEF+R+++E NL+S
Sbjct: 386 DIDPDNKDMSPEFRRWLRERNLSS 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,513,754
Number of Sequences: 37544
Number of extensions: 534893
Number of successful extensions: 1290
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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