Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0221
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   7e-24
SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              77   2e-14
SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)        55   7e-08
SB_50888| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              40   0.003
SB_36624| Best HMM Match : Glyco_hydro_20 (HMM E-Value=1.1e-13)        37   0.015
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              37   0.020
SB_2069| Best HMM Match : Glyco_hydro_20 (HMM E-Value=7.9e-14)         33   0.33 
SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)                30   1.8  
SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)                    29   4.1  
SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.1  
SB_40584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score =  107 bits (258), Expect = 7e-24
 Identities = 48/83 (57%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
 Frame = +2

Query: 2   KMNVFHWHIVDDQSFPYQSERFPDLSRLGAYH-ETLIYTKENIQTVIDHARNRGIRVIPE 178
           K NV HWH+VDDQSFP+QS+ FP LS  G+++ +T +Y+  ++  +ID+AR RGIRVIPE
Sbjct: 302 KFNVLHWHVVDDQSFPFQSQTFPSLSDQGSFNNKTHVYSPADVADIIDYARMRGIRVIPE 361

Query: 179 FDVPGHTRSWGVAKPDLLTHCYD 247
           FD PGHT SW  + P+LLT C D
Sbjct: 362 FDTPGHTYSWR-SIPNLLTKCCD 383



 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 28/55 (50%), Positives = 38/55 (69%)
 Frame = +1

Query: 268 LGPMNPIKDSTYTFLQELFHEVQALFPDRYIHIGGDEVDLDCWESNPEFQRYIQE 432
           LGP++P  DS Y FL+  F EV   FPD+YIH+GGDEV   CW+SNP    ++++
Sbjct: 392 LGPIDPTIDSNYDFLKAFFGEVAKRFPDQYIHLGGDEVGFGCWQSNPNITAWMEK 446



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +2

Query: 557 DTIVQVWKENEAPEMLNILRASH-QLIYSTGWYLDHLNTGGDWTEFFNKDPRD 712
           DT+V VWK     E+  +  A   + I S+ WYL++++ G DW  ++  +P D
Sbjct: 491 DTVVNVWKGGWPAELAKVTGAKKLKAILSSPWYLNYISYGIDWPNYYKVEPTD 543


>SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 296

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 36/75 (48%), Positives = 48/75 (64%)
 Frame = +2

Query: 5   MNVFHWHIVDDQSFPYQSERFPDLSRLGAYHETLIYTKENIQTVIDHARNRGIRVIPEFD 184
           MNVFHWH+ DDQ F  +S+ +P L  L +  + L YT+  I+ V+ +A   GIRVIPE D
Sbjct: 1   MNVFHWHLTDDQGFRIESKVYPKLHELAS--DGLYYTQHQIKDVVKYAARLGIRVIPEID 58

Query: 185 VPGHTRSWGVAKPDL 229
           VPGH  +   A P+L
Sbjct: 59  VPGHATAILTAYPEL 73



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
 Frame = +1

Query: 277 MNPIKDSTYTFLQELFHEVQALFPDRYIHIGGDEVDLDCWESNPEFQRYIQEHNLTSVAD 456
           +NP  D TY FL+ LF EV +LFPD Y HIGGDE +   W  N +   + ++HNL +  D
Sbjct: 94  LNPTIDKTYEFLENLFAEVTSLFPDEYFHIGGDENEGKHWSENKKMTAFKKKHNLKTNHD 153

Query: 457 FHALFMRNTIPLLSENSNR*CG----RKFSMKACPFRRHYRASVEGKRSS*NVEYPK 615
               F      +LS+   +  G       +M        +R + EG + S  +E  K
Sbjct: 154 LQTYFNIKLEKILSKFGKKLMGWDEIMTKNMPTTAVIHSWRGTTEGLKESTLIEAAK 210


>SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)
          Length = 228

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 25/61 (40%), Positives = 43/61 (70%)
 Frame = +2

Query: 2   KMNVFHWHIVDDQSFPYQSERFPDLSRLGAYHETLIYTKENIQTVIDHARNRGIRVIPEF 181
           K+NV H+H+ D   F  +S+ FPDL      +E+ IYT+++++ ++ +AR+RGIRV+PE 
Sbjct: 83  KLNVLHFHLSDLCRFSVESKLFPDLRN----NESEIYTQDDVRNLVAYARDRGIRVMPEV 138

Query: 182 D 184
           +
Sbjct: 139 E 139


>SB_50888| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 804

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 23/88 (26%)
 Frame = +2

Query: 2   KMNVFHWHIVDDQSFPYQSERFPDLSRLGAY-------HETL----------------IY 112
           K+N  H H+ DD+ +  +    P+L+ LG+        H+ +                 Y
Sbjct: 364 KLNKLHLHLTDDEGWRLEIPGLPELTTLGSKRCHDPKEHDCIDSQLGSGPGTGNSGTGYY 423

Query: 113 TKENIQTVIDHARNRGIRVIPEFDVPGH 196
           T    + ++ +AR+R + VIPEFD+PGH
Sbjct: 424 TVSEYRDILRYARDRHVEVIPEFDMPGH 451



 Score = 37.1 bits (82), Expect = 0.015
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
 Frame = +1

Query: 277 MNPIKDSTYTFLQELFHEVQALF----PDRYIHIGGDEVDLDCWESNPEFQRYIQE--HN 438
           +NP  +STY F++ +  +V+ +     P +  H GGDEV    W  +P      Q+   N
Sbjct: 500 INPCLESTYEFIEHIVFQVRRMHFDVQPLKTFHFGGDEVAHGAWTKSPACAALAQKLGLN 559

Query: 439 LTS---VADFHALFMRNTIPLLSE 501
            TS   V D    F+R    + S+
Sbjct: 560 FTSPSIVKDLKEYFVRRVSKITSK 583


>SB_36624| Best HMM Match : Glyco_hydro_20 (HMM E-Value=1.1e-13)
          Length = 362

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
 Frame = +1

Query: 277 MNPIKDSTYTFLQELFHEVQALF----PDRYIHIGGDEVDLDCWESNPEFQRYIQE--HN 438
           +NP  +STY F++ +  +V+ +     P +  H GGDEV    W  +P      Q+   N
Sbjct: 32  INPCLESTYEFIEHIVFQVRRMHFDVQPLKTFHFGGDEVAHGAWTKSPACAALAQKLGLN 91

Query: 439 LTS---VADFHALFMRNTIPLLSE 501
            TS   V D    F+R    + S+
Sbjct: 92  FTSPSIVKDLKEYFVRRVSKITSK 115


>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 1788

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
 Frame = +1

Query: 277  MNPIKDSTYTFLQELFHEVQALFPD----RYIHIGGDEVDLDCWESNPEFQRYIQE--HN 438
            +NP  +STY F++++  EV+++  D       H GGDEV    W  +   ++  Q   +N
Sbjct: 1278 INPCIESTYAFIEKVLTEVKSMHKDIQPLTVYHFGGDEVAHGAWTKSSACEQLAQRMGYN 1337

Query: 439  LT 444
            LT
Sbjct: 1338 LT 1339



 Score = 34.7 bits (76), Expect = 0.083
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 22/87 (25%)
 Frame = +2

Query: 2    KMNVFHWHIVDDQSFPYQ-----------SERFPD-------LSRLGA----YHETLIYT 115
            KMN FH+H+ DD+ +  +           S+R  D       LS+LG+          Y+
Sbjct: 1144 KMNKFHFHLTDDEGWRLEIPGLEELTTVGSKRCYDINTTRCILSQLGSGPSPSTSAQYYS 1203

Query: 116  KENIQTVIDHARNRGIRVIPEFDVPGH 196
              + + ++  A +  I+VIPEFD+PGH
Sbjct: 1204 VSDYKEILKRANDLHIQVIPEFDMPGH 1230


>SB_2069| Best HMM Match : Glyco_hydro_20 (HMM E-Value=7.9e-14)
          Length = 403

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +1

Query: 277 MNPIKDSTYTFLQELFHEVQALFPD----RYIHIGGDEVDLDCWESN 405
           +NP  +STYTF++ +  E+  +       +  H GGDEV    W ++
Sbjct: 42  INPCMESTYTFVKHVVKEIVRMHQHFQKLKMFHFGGDEVAHGAWTNS 88


>SB_33597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 79  PSGSLSRDLDLHQGKHSDGYRPRKEQRDQGYS*IRCT 189
           PSG LS+  +   G  +DG    KE+   G S +RC+
Sbjct: 492 PSGPLSKSAETQSGLPNDGDGKEKEKGSSGQSILRCS 528


>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
          Length = 225

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -2

Query: 550 RGTPSSKTSCHTIGSSFR*AEESCCA*IERENQLPKSGCALV-CISGILDSTPSNLDRLH 374
           RGT  S  S H + +       SC   I+ E+  P S C+ +  +   L S+ ++  +L+
Sbjct: 53  RGTAHSPVSVHELAAQRGSPTNSCFVEIQEEHHQPVSACSKIWALDHTLQSSATSNFQLN 112

Query: 373 HLRC 362
            L+C
Sbjct: 113 LLQC 116


>SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)
          Length = 1250

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/40 (45%), Positives = 21/40 (52%)
 Frame = -1

Query: 686 PSSRLQCSDDQGTSQWNRLTGDLLLGYSTFQELRFPSTLA 567
           PSSR   S     S WNR+   L  GYS  +E R PS +A
Sbjct: 500 PSSRTCISVFPLQSDWNRIRSSLRSGYSFLKERR-PSLVA 538


>SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 490 EESCCA*IERENQLPKSGCALVCISGILDSTPSNLDRLHHLRCECIYPE 344
           ++ C A  +R   L K    LV I+  LD     L+ LH L CE ++ +
Sbjct: 177 QQRCSAKTQRLTSLNKMVLFLVHINEFLDLLEEKLESLHCLYCEKVFKD 225


>SB_40584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 393 LGVESRIPEIHTRAQPDFGS*FSRSIHAQHDSSAQRKLEPIV 518
           L  +S  PEIH  ++P        +IH   D S QR  +P V
Sbjct: 68  LAQQSIDPEIHRPSEPSTQIFIGLAIHRPSDPSTQRSSDPTV 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,679,223
Number of Sequences: 59808
Number of extensions: 617047
Number of successful extensions: 1705
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1695
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)