Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0221
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 295 STYTFLQELFHEVQALFPDRYIHIGGDEVD 384
           S Y FL  + H      PD Y  + GD  D
Sbjct: 128 SQYEFLNAIHHYDDIWLPDTYFIMHGDFKD 157


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 295 STYTFLQELFHEVQALFPDRYIHIGGDEVD 384
           S Y FL  + H      PD Y  + GD  D
Sbjct: 128 SQYEFLNAIHHYDDIWLPDTYFIMHGDFKD 157


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 295 STYTFLQELFHEVQALFPDRYIHIGGDEVD 384
           S Y FL  + H      PD Y  + GD  D
Sbjct: 179 SQYEFLNAIHHYDDIWLPDTYFIMHGDFKD 208


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 295 STYTFLQELFHEVQALFPDRYIHIGGDEVD 384
           S Y FL  + H      PD Y  + GD  D
Sbjct: 128 SQYEFLNAIHHYDDIWLPDTYFIMHGDFKD 157


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -2

Query: 223 GFGYTPGPCVTGYIEFRNNPDPSVPCVVDNRLNVFLGVNQGLVIG 89
           G  +TP   V       N+ D S   V++NR N  +     + IG
Sbjct: 462 GLDFTPRGAVLARFTHLNHADFSYTIVINNRNNTSMKGTVRIFIG 506


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 29  VDDQSFPYQSERFPDLSRLGAYHETLIYTKENIQTVID 142
           + D+    ++E+  +LS++   H  LI T EN+  ++D
Sbjct: 344 LSDRVVALEAEK-KNLSKVIDQHSQLIDTLENVLAIVD 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,155
Number of Sequences: 438
Number of extensions: 5684
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)