Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0221
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein si...    89   2e-18
At3g55260.1 68416.m06137 glycosyl hydrolase family 20 protein si...    86   2e-17
At1g65590.1 68414.m07441 glycosyl hydrolase family 20 protein co...    83   1e-16
At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa...    29   3.4  
At5g18490.1 68418.m02181 expressed protein                             29   3.4  
At3g54980.1 68416.m06100 pentatricopeptide (PPR) repeat-containi...    28   7.8  
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ...    28   7.8  

>At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein
           similar to beta-hexosaminidase precursor SP:P43077 from
           [Candida albicans]
          Length = 580

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 35/78 (44%), Positives = 50/78 (64%)
 Frame = +2

Query: 2   KMNVFHWHIVDDQSFPYQSERFPDLSRLGAYHETLIYTKENIQTVIDHARNRGIRVIPEF 181
           K+NVFHWHI D QSFP      P L+  G+    ++YT E++  ++ +    G+RV+PE 
Sbjct: 201 KLNVFHWHITDSQSFPLVLPSEPSLAAKGSLGPDMVYTPEDVSKIVQYGFEHGVRVLPEI 260

Query: 182 DVPGHTRSWGVAKPDLLT 235
           D PGHT SWG A P+++T
Sbjct: 261 DTPGHTGSWGEAYPEIVT 278



 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
 Frame = +1

Query: 265 GLGPMNPIKDSTYTFLQELFHEVQALFPDRYIHIGGDEVDLDCWESNPEFQRYIQEHNLT 444
           G G +NP+   TY  ++ +  ++   FP+ + H GGDEV   CW+++P    ++      
Sbjct: 300 GTGQLNPLSPKTYEVVKNVIQDIVNQFPESFFHGGGDEVIPGCWKTDPAINSFLSSGG-- 357

Query: 445 SVADFHALFMRNTIP-LLSEN 504
           +++     ++ +T+P ++S+N
Sbjct: 358 TLSQLLEKYINSTLPYIVSQN 378


>At3g55260.1 68416.m06137 glycosyl hydrolase family 20 protein
           similar to beta-hexosaminidase A SP:P13723 from
           [Dictyostelium discoideum]
          Length = 541

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 38/76 (50%), Positives = 50/76 (65%)
 Frame = +2

Query: 2   KMNVFHWHIVDDQSFPYQSERFPDLSRLGAYHETLIYTKENIQTVIDHARNRGIRVIPEF 181
           K+NV HWHIVD+QSFP ++  +P+L + GAY     YT E+   ++  A+ RGI V+ E 
Sbjct: 215 KLNVLHWHIVDEQSFPLETPTYPNLWK-GAYSRWERYTVEDASEIVRFAKMRGINVMAEV 273

Query: 182 DVPGHTRSWGVAKPDL 229
           DVPGH  SWG   PDL
Sbjct: 274 DVPGHAESWGTGYPDL 289



 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 20/77 (25%), Positives = 42/77 (54%)
 Frame = +1

Query: 274 PMNPIKDSTYTFLQELFHEVQALFPDRYIHIGGDEVDLDCWESNPEFQRYIQEHNLTSVA 453
           P++  K+ T+  +  +  +++ +FP    H+GGDEV+ DCW++    + ++Q  N T+  
Sbjct: 298 PLDVTKNFTFDVISGILADMRKIFPFELFHLGGDEVNTDCWKNTTHVKEWLQGRNFTTKD 357

Query: 454 DFHALFMRNTIPLLSEN 504
            +    +R     +S+N
Sbjct: 358 AYKYFVLRAQQIAISKN 374



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +2

Query: 560 TIVQVWKENEAPEMLNILRASHQLIYSTG-WYLDHLNTGGDWTEFFNKDPRDLVNGLSKD 736
           T++Q W  ++  +   + +    +  + G WYLDHL+    W E +N +P   +NG+   
Sbjct: 395 TVIQNWLVSDICQKA-VAKGFRCIFSNQGYWYLDHLDV--PWEEVYNTEP---LNGIEDP 448

Query: 737 INVDNIVGG 763
                ++GG
Sbjct: 449 SLQKLVIGG 457


>At1g65590.1 68414.m07441 glycosyl hydrolase family 20 protein
           contains Pfam PF00728: Glycosyl hydrolase family 20,
           catalytic domain; contains Pfam PF02838: Glycosyl
           hydrolase family 20, domain 2; similar to
           Beta-hexosaminidase beta chain precursor (EC 3.2.1.52)
           (N-acetyl-beta- glucosaminidase)
           (Beta-N-acetylhexosaminidase) (Hexosaminidase B)
           (Swiss-Prot:P07686) [Homo sapiens]
          Length = 535

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 38/76 (50%), Positives = 48/76 (63%)
 Frame = +2

Query: 2   KMNVFHWHIVDDQSFPYQSERFPDLSRLGAYHETLIYTKENIQTVIDHARNRGIRVIPEF 181
           K+NV HWHIVD QSFP +   +P L   GAY  +  YT E+   ++++AR RGI V+ E 
Sbjct: 212 KLNVLHWHIVDTQSFPLEIPSYPKLWN-GAYSSSQRYTFEDAAEIVNYARRRGIHVLAEI 270

Query: 182 DVPGHTRSWGVAKPDL 229
           DVPGH  SWG   P L
Sbjct: 271 DVPGHALSWGKGYPAL 286



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 15/68 (22%), Positives = 37/68 (54%)
 Frame = +1

Query: 274 PMNPIKDSTYTFLQELFHEVQALFPDRYIHIGGDEVDLDCWESNPEFQRYIQEHNLTSVA 453
           P++   D T+  +  +  +   +F  +++H+GGDEV+  CW + P   +++++H ++   
Sbjct: 295 PLDVSSDFTFKVIDGILSDFSKIFKFKFVHLGGDEVNTTCWSATPRIAQWLKKHRMSEKE 354

Query: 454 DFHALFMR 477
            +    +R
Sbjct: 355 AYQYFVLR 362


>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
           family protein contains similarity to polycomb-M33
           interacting protein Ring1B [Mus musculus] GI:2239142;
           contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 486

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = -2

Query: 427 VCISGILDSTPSNLDRLHHLRCECIYPETRPGPHETVPAGRCMCCP*LGSSDRDPRSHVL 248
           +C+ GI+  T + ++ LH    ECI    R G +E  PA R  C       D DP+   L
Sbjct: 138 ICL-GIIKKTRTVMECLHRFCRECIDKSMRLGNNE-CPACRKHCASRRSLRD-DPKFDAL 194

Query: 247 VVAM 236
           + A+
Sbjct: 195 IAAL 198


>At5g18490.1 68418.m02181 expressed protein
          Length = 553

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 434 CSCMYLWNSGFDSQQSRSTSSPP 366
           C C Y WN GF   +S S+ S P
Sbjct: 3   CDCFY-WNKGFSELESESSESKP 24


>At3g54980.1 68416.m06100 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 851

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 37  PELPISERKVSGFKPSGSLSRDLDLHQGKHSDGYR 141
           P  PI    +SGF+  G++   LDL++    DG R
Sbjct: 687 PSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLR 721


>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 463

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 14  FHWHIVDDQSFPYQSERFPDLSRLGAYHETLIYTKENIQTVIDHARN 154
           F W +V D++   + +RF  L+ +G   ET ++  + ++ V+    N
Sbjct: 294 FGWGLVKDKAIYEKMDRFIRLTSMGVSKETQLHVLQLLKVVVGDGGN 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,952,879
Number of Sequences: 28952
Number of extensions: 422065
Number of successful extensions: 1105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)