Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0220
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    29   0.72 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   2.9  
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar...    27   3.8  
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual     26   6.7  

>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 222 QPESAGNSFIMCS**WHLRYYVYDAPATQPDPRCGQTSAQSSRP 353
           QP + G+SF+     W +  +  +  + QP  R     + SSRP
Sbjct: 263 QPATTGSSFVADK--WKMPMFTSNVTSAQPSARASPVQSNSSRP 304


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 9   YSGKMSSQLLIIC*IFSFQIILVNVVMGDEMDPCECLWNHELAMRRLI 152
           YSGK+ ++  ++C       + +N ++GDE    +C+   E A  R +
Sbjct: 414 YSGKVLAKYAMLC-------VTINDILGDETSSEQCIQKLEAAFARFV 454


>SPBC25H2.08c |mrs2||magnesium ion transporter
           Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 553 NHLMKIIYV*IGHSRLTLIHVESVLYHNSVFIIQITGIQ 437
           N ++ +I V  G   + L+H+ +++  NSV +  + G Q
Sbjct: 122 NSIVPVILVREGSILINLLHIRALIKANSVLLFDVYGSQ 160


>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 508 LTLIHVESVLYHNSVFIIQITGIQ 437
           L+L H+ S + H S+F+I+  G+Q
Sbjct: 59  LSLFHIISGVNHESLFVIRDLGVQ 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,542
Number of Sequences: 5004
Number of extensions: 64635
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)