Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0220
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 30 1.7
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 30 1.7
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 29 3.0
04_03_0047 + 10118929-10119276 29 3.0
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 29 5.3
04_04_1560 - 34432491-34432837,34433097-34433292 29 5.3
07_03_1629 - 28246440-28247339 28 7.0
12_02_0451 - 19179592-19179648,19179745-19179879,19180214-191802... 28 9.3
09_06_0051 - 20498261-20498362,20498491-20498612,20498694-204987... 28 9.3
>04_04_1624 - 34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 240 CQPTPAAEALVIARGIRFPCNTIGLD-GAVRLSGA 139
C P PAA+ + + I F C G+D GA+R G+
Sbjct: 1079 CVPKPAADEVALQVNIDFVCGQGGIDCGAIRAGGS 1113
>04_04_1358 +
32869222-32869306,32869947-32870008,32870301-32870393,
32870640-32870761,32873139-32873167,32873586-32873891,
32873977-32874035,32874148-32874279,32874414-32874455,
32874560-32875093,32875189-32875379,32875538-32876027,
32876273-32876335,32876704-32876805,32876895-32877215,
32877294-32877386,32877484-32877585,32877718-32877822,
32877933-32878066,32878429-32878612,32879226-32879357,
32879447-32879559,32879628-32879709,32880328-32881992
Length = 1746
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 199 SSNYQGFRSRSRLATASSCVRDDGICVTMYMMRPRRNQIQDAAKPAHNPHDRDGAPPTPP 378
+ Y+ + + + A + D C T ++ +PR D AK + H R PP+PP
Sbjct: 127 TGQYKEYATEAAAAAQVRRLLDIVACTTAFVNKPR-----DGAKHKSSKHARPATPPSPP 181
Query: 379 RI 384
+
Sbjct: 182 AL 183
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 135 AMRRLISLLRQGQSYCTESECLEQLPGLPQPESAGNSF 248
A R +S+ Q SYC + +Q+P P PE SF
Sbjct: 5 AAARAVSVAFQDASYCLDGGKAKQVPHAPSPEKKRASF 42
>04_03_0047 + 10118929-10119276
Length = 115
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 341 ILTTVTVLPLHLQEFNQHLPRRLVHPEWSLPPLNSSYL 454
I T+V V + L +Q LP +HP + +PPL +S L
Sbjct: 63 ITTSVVVAAIFLSSCHQPLPSA-IHPSYRMPPLPTSPL 99
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 368 LHLQEFNQHLPRRLVHPEWSLPPLNSSYLYYKHRVVIQH 484
LHL+ + +LVHP LP + S L ++ ++ + H
Sbjct: 554 LHLKNVPTEIASKLVHPSRRLPVVVSGLLQHESKISVLH 592
>04_04_1560 - 34432491-34432837,34433097-34433292
Length = 180
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +1
Query: 319 DAAKPAHNPHDRDGAPPTPPRI*STLAEATCSSRVVVATFEFQLFV 456
DA PA P APPTPP S A A + + VA +FV
Sbjct: 133 DAPPPASPPPPPSNAPPTPPHP-SGAASALGAGGLAVAAMLLPVFV 177
>07_03_1629 - 28246440-28247339
Length = 299
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = -2
Query: 268 HHHEHMMKLLPADSGCGSPGNCSRHSLSVQYDWP*RSS 155
HHH H A SG S G CS + V D P RSS
Sbjct: 143 HHHHHHHHGHGAASGASSVGECSTMPVMVPVD-PHRSS 179
>12_02_0451 -
19179592-19179648,19179745-19179879,19180214-19180247,
19180347-19180423,19180523-19180598,19180792-19180925,
19181772-19181878,19182505-19182808,19182913-19183218
Length = 409
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 183 TESECLEQLPGLPQPESAGNSFIMCS 260
++ +C +++P LP P AG SF++ S
Sbjct: 116 SKKQCAKKVPKLPPPAVAGTSFVIDS 141
>09_06_0051 -
20498261-20498362,20498491-20498612,20498694-20498741,
20498832-20498934,20499038-20499112,20499362-20499478,
20499591-20499656,20500527-20500632,20501196-20501275,
20501372-20501443
Length = 296
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 29 AIVDNLLNIFISNYFSKRSYG**NGSVRVP 118
A++ +L ++ SN+ KRSY G V VP
Sbjct: 184 AMLQKVLQLYASNFLQKRSYAYKGGEVIVP 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,666,211
Number of Sequences: 37544
Number of extensions: 457630
Number of successful extensions: 1362
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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