Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0220
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24620.1 68418.m02908 thaumatin-like protein, putative simila...    28   7.7  
At5g21940.1 68418.m02547 expressed protein supported by full len...    28   7.7  

>At5g24620.1 68418.m02908 thaumatin-like protein, putative similar
           to thaumatin-like protein [Arabidopsis thaliana]
           GI:2435406; contains Pfam profile PF00314: Thaumatin
           family
          Length = 420

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 298 PRRNQI-QDAAKPAHNPHDRDGAPPTPP 378
           P +NQ  Q  A P  N + +  APPTPP
Sbjct: 315 PTQNQYDQPLAPPTQNQYGQPMAPPTPP 342


>At5g21940.1 68418.m02547 expressed protein supported by full length
           cDNA GI:22531282 from [Arabidopsis thaliana]
          Length = 264

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 277 RKCHHHEHMMKLLPA--DSGCGSPGNCSRHSLSVQY 176
           R+ HHH+H MK LP       GS GN +    S+ +
Sbjct: 202 RQLHHHQHQMKKLPPLYPRSQGSFGNLTSSQSSLGF 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,416,337
Number of Sequences: 28952
Number of extensions: 344429
Number of successful extensions: 817
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)