Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0219
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.7  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    26   6.2  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.2  

>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 273 NGIYFSLEEANCSDNDFNIRHQYFY 199
           NG+Y+  EE    DND    H+Y Y
Sbjct: 296 NGVYYEEEEEEEDDNDLFDEHEYGY 320


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 220  YQTSVFLFFYMALLTKNSMSFIDFPLLPIYYT 125
            Y+  +F  F    L+  +  F++FP  PIY++
Sbjct: 1134 YRLEIFWSFVSKDLSNTTNDFLEFPYKPIYFS 1165


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 214 TSVFLFFYMALLTKNSMSFIDFPLLPIY-YTT 122
           TSVF FF  ALL K + S++     P++ YT+
Sbjct: 5   TSVFSFFLHALLLKTAFSYVIKRNNPVFDYTS 36


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 315 RKTKKIYQIIMSMINGIYFSLEEANC 238
           RK +K+  I+++ I  IY+    +NC
Sbjct: 82  RKNQKLTSIVVNAIQAIYWYARRSNC 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,965
Number of Sequences: 5004
Number of extensions: 36015
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)