Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0219
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   3.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   3.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   3.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   3.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.8  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 141 KRGKSMKLIEFLVNSAI*KNKNTDV*Y*NHC 233
           +R +  K+I  L N  I  N N    Y N+C
Sbjct: 74  ERSREPKIISSLSNKTIHNNNNYKYNYNNNC 104


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 141 KRGKSMKLIEFLVNSAI*KNKNTDV*Y*NHCLNNS 245
           +R +  K+I  L N  I  N N    Y N+  NN+
Sbjct: 74  ERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNN 108


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 141 KRGKSMKLIEFLVNSAI*KNKNTDV*Y*NHCLNNS 245
           +R +  K+I  L N  I  N N    Y N+  NN+
Sbjct: 74  ERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNN 108


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 141 KRGKSMKLIEFLVNSAI*KNKNTDV*Y*NHCLNNS 245
           +R +  K+I  L N  I  N N    Y N+  NN+
Sbjct: 74  ERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNN 108


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 141 KRGKSMKLIEFLVNSAI*KNKNTDV*Y*NHCLNNS 245
           +R +  K+I  L N  I  N N    Y N+  NN+
Sbjct: 307 ERSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNN 341


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 141 KRGKSMKLIEFLVNSAI*KNKNTDV*Y*NHCLNNS 245
           +R +  K+I  L N  I  N N    Y N+  NN+
Sbjct: 74  ERSREPKIISSLSNRTIHNNNNYKYNYNNNNYNNN 108


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 139 PIYYTTPHQLLS 104
           P Y T PHQ+ S
Sbjct: 609 PFYITEPHQIFS 620


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,064
Number of Sequences: 438
Number of extensions: 2542
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)