Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0218
         (807 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   1.2  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   6.6  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   8.7  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   8.7  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 244 ANVTSTRSPRDSRP*KPADIFAWKLFQHSENCSSDAMIATTRRGT 110
           A+ T T S   S    PA I ++ L QH   CSS   + +T   T
Sbjct: 206 ASATYTNSANSSIW-SPASIDSFTLEQHRSWCSSSQPVLSTTNST 249


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 743 VFCRTRGTCFQWIYAFS 693
           VFCR R   + + YAFS
Sbjct: 112 VFCRDRVNPYLFYYAFS 128


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -3

Query: 670 EEELFDAIDGLFG 632
           +E+L+DAI+ L+G
Sbjct: 337 KEKLYDAIEALYG 349


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 507 ASKPKPTSRPGPRSSQQRQSVMTKLETDLDSKP 605
           AS   P+  P P S +    V+ + E   + KP
Sbjct: 213 ASNYSPSQSPEPESVRPLSLVVRRCEEPTEEKP 245


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,455
Number of Sequences: 336
Number of extensions: 3707
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21999028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)