Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0218
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.1  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   5.5  
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb...    26   7.2  

>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 466 VKGLTGNQNEESSTHPNQSRL 528
           + GL+GN+NE  S  P+ SRL
Sbjct: 1   MSGLSGNENEVPSISPSDSRL 21


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
 Frame = +3

Query: 495 RKFHASKPKPTSRPGPRSSQQRQSVMTKLETDLDSKPSS-TPVAVKR---XXXXXXXXXX 662
           RKFHA   K  S+  P ++ + + +   +E  L   P S  P + +R             
Sbjct: 243 RKFHAKTRKTPSK--PVTNNEDEDIKRAIELSLKEMPQSREPPSYERPSEANVVISQDQH 300

Query: 663 XXXXXXXXAKRKCVDPLEAGPSGSAKDEFVTIPAKM 770
                    KR     LE     S KD+ VT P  M
Sbjct: 301 LTEDEDEELKRAIAISLEEAQKSSQKDDNVTAPNNM 336


>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 486 SK*RKFHASKPKPTSRPGPRSSQQRQSVMTKLETDLDSKPSS 611
           SK R+F A K     RPG  S++ R+    +     + KPS+
Sbjct: 254 SKRRRFDAFKEMDRQRPGKYSNRGRKFKKQRSSNASEEKPSA 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,546
Number of Sequences: 5004
Number of extensions: 63417
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)