Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0216
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   0.94 
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   2.2  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    25   3.8  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   3.8  
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    25   5.0  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   6.7  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    24   8.8  
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    24   8.8  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 261 SKLAIKF-KFERTKNTFINSINFVAHDKFSDSFSE 160
           S +A KF +F+  K +F   IN+  H+KF D  +E
Sbjct: 34  SPIASKFHEFDEQKKSF-EIINYAGHEKFVDDITE 67


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 279 LESFFFSKLAIKFKFERTKNTFINS 205
           L + F  K AIK  FE  KN FIN+
Sbjct: 356 LRTSFPEKYAIKVDFEFLKNVFINT 380


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 234 ERTKNTFINSINFVAHDKFSDS-FSELPRLS 145
           ER K+T   +  F+AHD +S+  +S   RLS
Sbjct: 103 ERFKDTNFEARGFIAHDLYSEEMYSSRNRLS 133


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -2

Query: 390 TCFQMPYTSAIQIQ*FNFNLNISSYYFKSRYKTQRTALESFFFSKLAIKFKFERTKNTFI 211
           +C QMP     ++   +FNL  + + F S  +T        FFS LAI  K E      +
Sbjct: 533 SCLQMPLIERRRMFFEHFNLIPNRFQFVSSLETNEEQSIQEFFS-LAITNKCEGLMVKVL 591

Query: 210 NSIN 199
           N  N
Sbjct: 592 NGTN 595


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 161 NYRVYQNTSCDNPYTHTFNSENPKEC 84
           NY +Y     D  YT+TFN E   +C
Sbjct: 327 NYMMYVGE--DGAYTYTFNLEKRSDC 350


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
 Frame = +2

Query: 23  DKEPIRFCRFSENLPI----IMTYNILW 94
           D    ++  F EN+PI    I+ YN LW
Sbjct: 106 DSADFQYSAFRENMPILLLVIIVYNFLW 133


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 148 IRTLHVITHTRTHLIL--KIPKNVIRHYDGEILTKSAKANWL 29
           +  L  IT TR  L L  K+P N +  Y GE++ +  K   L
Sbjct: 66  LSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKL 107


>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 212 SIPLISSRMTNLAIVFLNYRVYQNTSCDNPYTHTFNSENP-KECYTSL 72
           S+P     + NLA     Y  Y  ++ +NP    F +  P  EC  S+
Sbjct: 7   SVPQDDPSVPNLAQAPPAYSEYNESATENPAVDQFKNTTPVAECAKSI 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,595
Number of Sequences: 5004
Number of extensions: 29183
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)