Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0216
         (436 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35882| Best HMM Match : Neur_chan_memb (HMM E-Value=8.8e-26)        31   0.41 
SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10)         31   0.41 
SB_15403| Best HMM Match : CH (HMM E-Value=0)                          30   0.95 
SB_32173| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-34)                 27   5.0  

>SB_35882| Best HMM Match : Neur_chan_memb (HMM E-Value=8.8e-26)
          Length = 360

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 286 SLSLI-AXLKIIARYI*IEIESLYLYG*GIRHLETRQNLFKCLFPLLKFIP 435
           S S+I   L +IA  I ++I   YL+G GI     RQ LFK + PLL F P
Sbjct: 161 SASMIEVFLALIATGISLKINYSYLFGDGISP-RMRQLLFKTIGPLLGFDP 210


>SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10)
          Length = 384

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 286 SLSLI-AXLKIIARYI*IEIESLYLYG*GIRHLETRQNLFKCLFPLLKFIP 435
           S S+I   L +IA  I ++I   YL+G GI     RQ LFK + PLL F P
Sbjct: 225 SASMIEVFLALIATGISLKINYSYLFGDGISP-RMRQLLFKTIGPLLGFDP 274


>SB_15403| Best HMM Match : CH (HMM E-Value=0)
          Length = 1907

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -3

Query: 161 NYRVYQNTSCDNP---YTHTFNSENPKECYT 78
           +Y +Y N SC+ P   Y H  N+++PKE  T
Sbjct: 787 DYHLYLNASCNIPVRVYCHGMNTDSPKEYIT 817


>SB_32173| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-34)
          Length = 375

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 221 THLSIPLISSRMTNLAIVFLNYRVYQNTSCDNPYTHTFNSE 99
           T+    L+ S  T+  + F  +  Y N+SC NP+ + F ++
Sbjct: 260 TYFPSSLVISASTDRLLKFAKWMHYSNSSC-NPFLYAFRNQ 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,497,904
Number of Sequences: 59808
Number of extensions: 197715
Number of successful extensions: 520
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)