Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0216
         (436 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-580|AAF51128.1|  757|Drosophila melanogaster CG3277-PA,...    27   8.3  
AE014134-579|AAN10388.2|  808|Drosophila melanogaster CG3277-PB,...    27   8.3  

>AE014134-580|AAF51128.1|  757|Drosophila melanogaster CG3277-PA,
           isoform A protein.
          Length = 757

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +2

Query: 2   TSIN*FSDKEPIRFCRFSENLPIIMTYNILWD-FQN*MC---ACMGYHMKCSDKRGSSEK 169
           T++  + +K P    R+ +NLP   +YN+L     N  C    C  Y +K  +K  S+E 
Sbjct: 87  TNVTLYMEKIPRLQVRWQDNLPQGTSYNVLVSAVNNSRCPDAPCSEYGIK--EKNASAET 144

Query: 170 LSLNL 184
            S+NL
Sbjct: 145 HSVNL 149


>AE014134-579|AAN10388.2|  808|Drosophila melanogaster CG3277-PB,
           isoform B protein.
          Length = 808

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +2

Query: 2   TSIN*FSDKEPIRFCRFSENLPIIMTYNILWD-FQN*MC---ACMGYHMKCSDKRGSSEK 169
           T++  + +K P    R+ +NLP   +YN+L     N  C    C  Y +K  +K  S+E 
Sbjct: 87  TNVTLYMEKIPRLQVRWQDNLPQGTSYNVLVSAVNNSRCPDAPCSEYGIK--EKNASAET 144

Query: 170 LSLNL 184
            S+NL
Sbjct: 145 HSVNL 149


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,402,218
Number of Sequences: 53049
Number of extensions: 282801
Number of successful extensions: 512
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1376136036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)