Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0216
         (436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81595-1|CAB04753.2|  337|Caenorhabditis elegans Hypothetical pr...    30   0.63 
AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical...    29   1.1  
Z78417-10|CAB01688.2|  745|Caenorhabditis elegans Hypothetical p...    27   4.4  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    27   4.4  
AF040653-4|ABS83854.1|  339|Caenorhabditis elegans Hypothetical ...    27   5.9  

>Z81595-1|CAB04753.2|  337|Caenorhabditis elegans Hypothetical
           protein T22H2.1 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -2

Query: 393 LTCFQMPYTSAIQI-Q*FNFNLNISSYYFKSRYKTQRTALESFFFSKLAIKFKFERTKNT 217
           LTCF   + +A QI Q ++  L +  +     +        S ++SKL  + KFE  +  
Sbjct: 110 LTCFVYRHNAAAQINQTYSSKLYLDKFLLFLTHLFPFFTGISMWYSKLTYQQKFEYVRQN 169

Query: 216 FINSINFVAHDKF 178
           F   ++++A D F
Sbjct: 170 FPQCLSWLAFDGF 182


>AL031635-11|CAA21038.3|  446|Caenorhabditis elegans Hypothetical
           protein Y47D3B.3 protein.
          Length = 446

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 378 MPYTSAIQIQ*FNFNLNISSYYFKSRYKTQRTALESFFF 262
           +P T AI +  FNF+L + ++ + S Y T   +  SFFF
Sbjct: 49  VPATFAIIVSFFNFSLLLFNHTYISHYATLSLSSFSFFF 87


>Z78417-10|CAB01688.2|  745|Caenorhabditis elegans Hypothetical
           protein C35C5.2 protein.
          Length = 745

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +2

Query: 158 SSEKLSLNLSCATKLMELINVFFVRSNLNFIASLEKK 268
           S+ K    LS AT + +LINV  +RSNL+   SL KK
Sbjct: 30  SNSKPLPKLSIATNIKQLINVDNIRSNLH---SLTKK 63


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 213 INSINFVAHDKFSDSFSELPRLSE 142
           I  I +VA ++FSD F  LP+L++
Sbjct: 234 IYEIGYVATEQFSDFFDSLPKLTQ 257


>AF040653-4|ABS83854.1|  339|Caenorhabditis elegans Hypothetical
           protein K05F6.12 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 215 LSIPLISSRMTNLAIVFLNYRVYQNTSCDNPYTHT 111
           LS PL+S  + NL  VF N ++ + T C    T T
Sbjct: 20  LSFPLLSLPLDNLKDVFRNMKITELTCCSLLSTKT 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,886,357
Number of Sequences: 27780
Number of extensions: 158436
Number of successful extensions: 398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)