Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0216
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containi...    30   0.77 
At3g60040.1 68416.m06705 F-box family protein contains a novel d...    28   3.1  
At3g05650.1 68416.m00629 disease resistance family protein conta...    28   3.1  
At3g48400.1 68416.m05283 DC1 domain-containing protein similar t...    27   5.5  
At5g10760.1 68418.m01250 aspartyl protease family protein contai...    27   7.2  
At3g18340.1 68416.m02333 F-box family protein contains F-box dom...    27   7.2  
At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger) fa...    26   9.5  

>At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 706

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 149 KRGSSEKLSLNLSCATKLMELINVFFVRSNLNFIASLEKKKLSNAVL 289
           +R +   L L+ +CAT L+ L N++    NL   A++ K   +  V+
Sbjct: 600 RRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVI 646


>At3g60040.1 68416.m06705 F-box family protein contains a novel
           domain with similarity to F-box domain;
          Length = 838

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 267 FFSKLAIKFKFERTKNTFINSINFVAHDKFSDSF 166
           F  K  IKF+ E T  +F  S+  + HD  S +F
Sbjct: 184 FLIKTPIKFRIEGTTPSFSGSVFALLHDSVSGTF 217


>At3g05650.1 68416.m00629 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-4A protein
           [Lycopersicon esculentum] gi|3097197|emb|CAA73187
          Length = 868

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 119 CMGYHMKCSDKRGSSEKLSLNLSCATKLMELINVFFVRSNLNFIASLE 262
           C    + C+DK G   +L L+ SC        +  F   NL F+ +L+
Sbjct: 78  CYWDGITCNDKSGEVLELDLSRSCLQSRFHSNSSLFTVLNLRFLTTLD 125


>At3g48400.1 68416.m05283 DC1 domain-containing protein similar to
           UV-B light insensitive ULI3 [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 619

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 344 NHC-ICMAEVYGIWKHVRISLNAYFH 418
           +HC +C   V+G++ +V +  + YFH
Sbjct: 138 DHCGVCKKTVFGMYPYVCLECDVYFH 163


>At5g10760.1 68418.m01250 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 464

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 149 YQNTSCDNPYTHTFNSENPKECYTSL*WGD 60
           YQN SC +P      S +   C  S+ +GD
Sbjct: 183 YQNVSCSSPMCEDAESCSASNCVYSIVYGD 212


>At3g18340.1 68416.m02333 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 361

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -2

Query: 222 NTFINSINFVAHDKFSDSFSELPRLSEHFM**PIHAHI*F*KSQRMLYVIMMGRFSLNLQ 43
           N +  + N    + F  SF     +S HF   P   H+   + + +L V    RF+L  Q
Sbjct: 193 NLYWTAYNEDTREHFLGSFDFSTEISMHFCLLPCAKHVSGLQDKLVLTVFKGDRFALLKQ 252

Query: 42  KRIGS 28
            RI S
Sbjct: 253 SRISS 257


>At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 210

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 181 FVMRDEINGIDKCVFCSFEFE 243
           +V     N ID+CV C  EFE
Sbjct: 150 YVFSHNKNEIDRCVVCQMEFE 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,074,514
Number of Sequences: 28952
Number of extensions: 135331
Number of successful extensions: 288
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)