Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0215
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    72   7e-14
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    29   0.37 
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    27   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   3.4  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   4.5  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   6.0  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   7.9  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 71.7 bits (168), Expect = 7e-14
 Identities = 35/88 (39%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
 Frame = +1

Query: 10  NEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITI--HDKGHVYDVLKN 183
           N+ LFY  ++ ++ EM+PI+YTPT G A ++F  +YR P G ++ I  +D  ++   L  
Sbjct: 83  NQTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDIDHNDLSYIKQQLSE 142

Query: 184 WPDTD-VRAIVVTDGERILGLGDLGHAG 264
           +  +D V  I++TD E ILG+GD G  G
Sbjct: 143 FGKSDSVEYIIITDSEGILGIGDQGVGG 170



 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 32/79 (40%), Positives = 45/79 (56%)
 Frame = +3

Query: 270 IPVGKLALYTALGGIKPHQCLPITIDVGTNTQSILDDPLYIGLRQRRVRGPDYDELLDEF 449
           I V K  L T   G+ P++ LPI +DVGTN ++   +  Y+GLR+ RVRG  YD  LD  
Sbjct: 173 ISVAKGHLMTLCAGLDPNRFLPIVLDVGTNNETHRKNHQYMGLRKDRVRGEQYDSFLDN- 231

Query: 450 MLAVVRRYGQNCLVQFEDF 506
           ++  +R       + FEDF
Sbjct: 232 VIKAIREVFPEAFIHFEDF 250



 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 512 ANAFRLLQKYRNKYCTFNDDI 574
           ANA R+L  YR     FNDDI
Sbjct: 253 ANAKRILDHYRPDIACFNDDI 273


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 371 NRLGVRTHVDSDGQTLMRLDASERGVE 291
           NRLGV+ H D+D  TLM  D + +G+E
Sbjct: 269 NRLGVQEHTDADALTLMSQD-NVKGLE 294


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -1

Query: 394 PMYSGSSRIDWVFVPTSIVMGRH*CGLMPPSAV*SASLPTGMPIQHAPSRQDPEYVLRRL 215
           P+      + +VFVP+   +GR  CG+  P  V SAS+ T       P  Q  +  + +L
Sbjct: 67  PLLCEDKNVPYVFVPSKAALGRA-CGVSRP--VISASITTNEASDLLPQIQAIKLAIEKL 123


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 352 PTSIVMGRH*CGLMPPSAV*SASLPTGMP 266
           P S+ MG      +PPSA  +  LP GMP
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 262 GWASLLANSRSTPRSEASSRISVCPSLSTWVRTPSRFWT 378
           GW ++L +  S      SS I +  ++  W    S+F T
Sbjct: 398 GWCNVLDDESSQQNQNFSSEIGIFQTVKLWYLNESKFDT 436


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 124 PRGLFITIHDKGHVYDVLKNWPDTDVRA 207
           P GL+I + +K   +D  + W   D RA
Sbjct: 740 PPGLYIPLAEKRTAWDCFERWIQVDPRA 767


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 479 ELSRAVRGLRNANAFRLLQKYRNKY 553
           EL R  + L++ +A RL ++YR KY
Sbjct: 191 ELDRQRQELQSVDAERLAEEYREKY 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,810
Number of Sequences: 5004
Number of extensions: 44879
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)