Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0215
(574 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.) 145 3e-35
SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0) 29 3.6
SB_2124| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0055) 28 4.7
SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3) 28 6.2
SB_3243| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_47523| Best HMM Match : HLH (HMM E-Value=1.1e-18) 28 6.2
SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12) 28 6.2
SB_58071| Best HMM Match : Death (HMM E-Value=8.4e-12) 27 8.2
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 27 8.2
>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 145 bits (351), Expect = 3e-35
Identities = 61/88 (69%), Positives = 77/88 (87%)
Frame = +1
Query: 1 LDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDKGHVYDVLK 180
L+RNE LF+R + D E+MPIVYTPTVGLAC+K+G+++RRPRGLFI+IHDKGH+ D++
Sbjct: 126 LERNESLFFRVLFDYTEELMPIVYTPTVGLACRKYGMIFRRPRGLFISIHDKGHIRDIVS 185
Query: 181 NWPDTDVRAIVVTDGERILGLGDLGHAG 264
NWP T+V+AIV+TDGERILGLGDLG G
Sbjct: 186 NWPTTEVKAIVMTDGERILGLGDLGCCG 213
Score = 127 bits (307), Expect = 6e-30
Identities = 55/86 (63%), Positives = 66/86 (76%)
Frame = +3
Query: 249 LGACWMGIPVGKLALYTALGGIKPHQCLPITIDVGTNTQSILDDPLYIGLRQRRVRGPDY 428
LG C MGIPVGKLALYT GGI P CLP+ IDVGTN + +LDDP YIG+RQ+R DY
Sbjct: 209 LGCCGMGIPVGKLALYTVCGGIDPEGCLPVMIDVGTNNEELLDDPFYIGVRQKRCNTEDY 268
Query: 429 DELLDEFMLAVVRRYGQNCLVQFEDF 506
DEL+DEF+ A ++R+G L+QFEDF
Sbjct: 269 DELIDEFIQAALQRFGPTTLIQFEDF 294
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +2
Query: 509 NANAFRLLQKYRNKYCTFNDDI 574
N NAFR L+KYRNK CTFNDDI
Sbjct: 296 NHNAFRFLEKYRNKICTFNDDI 317
>SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 65 LCTLRRLAWPVRSSALCTADQGASSSRSTIRDMYTM 172
+C R PVR+SA+ T ++ SSR+TI T+
Sbjct: 165 ICKDRVFMCPVRTSAVVTGEESTLSSRNTISSADTL 200
>SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 939
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +3
Query: 201 PRHCCNR--RRTYSGSWRLGACWMGIPVGKLALYTALGGIKPHQCLPITIDVGTNTQSI 371
PR CN + Y + +LG CW I + ++ T G +C TI +T+ +
Sbjct: 558 PRSVCNDACKPGYWQTRKLGCCWECIKCSESSISTKTGSTNCTECAEDTIPNSAHTECV 616
>SB_2124| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0055)
Length = 596
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/60 (26%), Positives = 22/60 (36%)
Frame = +1
Query: 181 NWPDTDVRAIVVTDGERILGLGDLGHAGWASLLANSRSTPRSEASSRISVCPSLSTWVRT 360
+W D VV G G G+ G W S+ ST + ++ S WV T
Sbjct: 79 SWVSVDFGRGVVITGIATQGYGERGIQEWVSMFMLMYSTQEDDNEKTLAPADRSSEWVST 138
>SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)
Length = 529
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/28 (64%), Positives = 18/28 (64%)
Frame = +1
Query: 286 SRSTPRSEASSRISVCPSLSTWVRTPSR 369
SRSTPRS A SRI PS ST T SR
Sbjct: 435 SRSTPRSRAGSRIRT-PSTST-TTTSSR 460
>SB_3243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 189 GYGRPRHCCNRRRTYSGSWRLGACWMGIPVGKL-ALYTALGGIKPH 323
GY C + RT+S S G W G+ + L A T +KPH
Sbjct: 117 GYSLSYDCNSPTRTHSHSLLFGDIWKGLLMSLLGAFSTTSKKVKPH 162
>SB_47523| Best HMM Match : HLH (HMM E-Value=1.1e-18)
Length = 207
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 167 TMFLRTGRIRTSAPLL*PTENVFW 238
TM++R RI SAP++ EN +W
Sbjct: 179 TMYVRWSRISESAPVIRCRENTYW 202
>SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)
Length = 1338
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 503 VLELHETVLPVAAHDGEHELVEQLVVVGAAH 411
++ +H ++L +A HD H+L+ L V +H
Sbjct: 586 LIHVHFSILHLAVHDVSHDLIHSLSEVAFSH 616
>SB_58071| Best HMM Match : Death (HMM E-Value=8.4e-12)
Length = 633
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 234 SGSWRLGACWMGIPVGKLALYTALGGIKP 320
+G WR A +G+PV K +++ + G P
Sbjct: 530 AGGWRELAVQLGVPVSKCSIFQSAGSKSP 558
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 497 ELHETVLPVAAHDGEHELVEQLVVVGAAHAPLPEPDVQR 381
E+H TV+ V+ E EL + V+V A L PDV+R
Sbjct: 178 EIHFTVVHVSPPPPEVELHVEQVIVFCEPAQLTTPDVRR 216
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,551,321
Number of Sequences: 59808
Number of extensions: 381004
Number of successful extensions: 1118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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