Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0215
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...   130   9e-31
U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical pr...    30   1.0  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    29   1.8  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    29   1.8  
Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC024810-5|AAF60763.1|  507|Caenorhabditis elegans Hypothetical ...    28   5.4  

>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score =  130 bits (313), Expect = 9e-31
 Identities = 58/89 (65%), Positives = 70/89 (78%), Gaps = 2/89 (2%)
 Frame = +1

Query: 4   DRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDK--GHVYDVL 177
           DRNE L+YR + DNV E+MPIVYTPTVG ACQ FG +YR P+GL+ITI+D     ++ +L
Sbjct: 116 DRNEKLYYRVLCDNVKELMPIVYTPTVGQACQHFGFIYRNPKGLYITINDNSISKIHQIL 175

Query: 178 KNWPDTDVRAIVVTDGERILGLGDLGHAG 264
            NWP  +VRAIV+TDGERILGLGDLG  G
Sbjct: 176 ANWPTENVRAIVITDGERILGLGDLGTYG 204



 Score =  120 bits (290), Expect = 6e-28
 Identities = 51/86 (59%), Positives = 67/86 (77%)
 Frame = +3

Query: 249 LGACWMGIPVGKLALYTALGGIKPHQCLPITIDVGTNTQSILDDPLYIGLRQRRVRGPDY 428
           LG   +GIPVGKLALY AL GI+P  CLP+ +DVGT+   +L+DP Y GLR++RVRGP+Y
Sbjct: 200 LGTYGIGIPVGKLALYVALAGIRPEWCLPVILDVGTDNSELLNDPFYTGLRRKRVRGPEY 259

Query: 429 DELLDEFMLAVVRRYGQNCLVQFEDF 506
           D L+D FM A  +R+G++ L+QFEDF
Sbjct: 260 DTLVDNFMKAATKRFGRDTLIQFEDF 285



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +2

Query: 509 NANAFRLLQKYRNKYCTFNDDI 574
           N NA+RLL +Y+ +YC FNDDI
Sbjct: 287 NQNAYRLLDRYKGEYCMFNDDI 308


>U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical
           protein F41C3.2 protein.
          Length = 499

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 509 SEVLELHETVLPVAAHDGEHELVEQLVVVGAAHAPLPEPDVQRVVQNRLGVRT 351
           +E L  +ET+LP + +    +  + L+   A  APLP   +   + NR GV+T
Sbjct: 71  NESLSRNETILPSSLNFNFSKFEQDLLFSAAYIAPLPSIIILYFLTNRSGVKT 123


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
            protein 19,isoform a protein.
          Length = 1783

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
 Frame = +3

Query: 108  PCVPPTKGPLHHDPR*GTCIRCS*ELAGYGRPRHCCNRRRTYSGSWRLGACWMGI----P 275
            P +PP    +H +   G   R + + AGY +        R Y+ +  +GA    I     
Sbjct: 1661 PALPPYANHIHDETDDGPRYRDTGDRAGYDQSSRMVVANRKYADARIVGAARREIEEAYS 1720

Query: 276  VGKLALYTALGGIKP---HQCLPITIDVGTNTQSILDDPLYIGLRQRRVRGPDYDELL 440
            +G+  +  A   + P   H  +    D+  N++S L  P     RQ   RG   ++LL
Sbjct: 1721 LGEQEIDLAADSLAPLMQHVGMHDIRDINENSRSALLRPAENSSRQHDSRGGSQEDLL 1778


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
            calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
 Frame = +3

Query: 108  PCVPPTKGPLHHDPR*GTCIRCS*ELAGYGRPRHCCNRRRTYSGSWRLGACWMGI----P 275
            P +PP    +H +   G   R + + AGY +        R Y+ +  +GA    I     
Sbjct: 1661 PALPPYANHIHDETDDGPRYRDTGDRAGYDQSSRMVVANRKYADARIVGAARREIEEAYS 1720

Query: 276  VGKLALYTALGGIKP---HQCLPITIDVGTNTQSILDDPLYIGLRQRRVRGPDYDELL 440
            +G+  +  A   + P   H  +    D+  N++S L  P     RQ   RG   ++LL
Sbjct: 1721 LGEQEIDLAADSLAPLMQHVGMHDIRDINENSRSALLRPAENSSRQHDSRGGSQEDLL 1778


>Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical
           protein F17B5.3 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 176 RTSYTCPLSWIVMKRPLGR 120
           R + TCP  WI  +RP GR
Sbjct: 66  RPTRTCPRDWITFERPQGR 84


>AC024810-5|AAF60763.1|  507|Caenorhabditis elegans Hypothetical
           protein Y54E10A.6 protein.
          Length = 507

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 123 SAVHKAELLTGQANRRSVHNWHHFSHVIRDETVEQMLIAVQ 1
           S +  AEL   ++ R +V   H + H+++DE +   L+  Q
Sbjct: 381 SLLRDAELARKRSKRSTVDPLHKYLHIVKDENILACLVDSQ 421


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,583,847
Number of Sequences: 27780
Number of extensions: 272872
Number of successful extensions: 807
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)