Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0215
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   1.6  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   3.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.7  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
          protein.
          Length = 190

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 75 SVHNWHHFSHVIRDETVEQMLIA 7
          SVH+ HH   V RD   E +L+A
Sbjct: 21 SVHHCHHNGVVHRDLKPENLLLA 43


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 127 LVGGTQGRTSDRPGQPSECTQLASFQPRYPRRNG 26
           + G   G  + RPGQPS   Q A F+     +NG
Sbjct: 70  MTGDAYGGLNIRPGQPSR--QHAGFEFGKEYKNG 101


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 208 IVVTDGERILGLGDLGHAGWASLLANSR 291
           IV+ +GE    L D  + G   LL N+R
Sbjct: 503 IVMANGEVATSLSDGSYFGEICLLTNAR 530


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 208 IVVTDGERILGLGDLGHAGWASLLANSR 291
           IV+ +GE    L D  + G   LL N+R
Sbjct: 471 IVMANGEVATSLSDGSYFGEICLLTNAR 498


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 151 DKGHVYDVLKNW 186
           D+   YDVL++W
Sbjct: 260 DQSETYDVLRSW 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,635
Number of Sequences: 438
Number of extensions: 3270
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)