Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0214
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    39   7e-04
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   1.8  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   2.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   4.2  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.2  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.6  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   9.6  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    25   9.6  

>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
 Frame = +3

Query: 228 AKRPVVQQCFTSVSSCSPSRAALLTGSPSHQNGMYGLHHGVHHXNSF------------D 371
           AK  V    F + S+CSP+R+ LL+G+ +H  G+  +   V   +              D
Sbjct: 43  AKEGVRLTNFHTASACSPTRSMLLSGTDNHIAGLGQMAETVRRFSKVWGGKPGYEGYLND 102

Query: 372 NVTSLPNLLRQNGIMTGIIGKKHVG 446
            V +LP +L++ G  T + GK H+G
Sbjct: 103 RVAALPEILQEAGYYTTMSGKWHLG 127



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 127 KVRNVLLLLADDGGF-EIGAYRNKICQTPNIDELARNGLLFNNASHQ*AVAP 279
           K  N L+++ADD G+ ++  + ++I  TPNI+ LA+ G+   N     A +P
Sbjct: 10  KKPNFLVIVADDLGWSDVSPFGSEI-HTPNIERLAKEGVRLTNFHTASACSP 60


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 315 HQNGMYGLHHGVHHXNSFDNVTSLPNLLRQNGI 413
           H  G +  HH  HH +S D+  S P   +QN +
Sbjct: 295 HHEGHHHHHHHHHHHHSHDDDPSSPAEKKQNHV 327


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 76   KLALIFYFFITETVLSDKVRNVLLLLADDGGFEIGAYRNKICQTPNIDE-LARNGLLFN 249
            +L  + ++ I E +L  K+  +LLL   DG   +   R ++    +++  LA    +FN
Sbjct: 926  RLLKVIFYRIHEILLDPKLGQLLLLFESDGANSVTTPREQMVYRNHVESILAPESKIFN 984


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 103  ITETVLSDKVRNVLLL-LADDGGFEIGAYR 189
            +T+ +L D   N  ++ + DD GF+I AYR
Sbjct: 1489 MTQRMLEDSSANAAVIAIRDDVGFKIAAYR 1518


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -3

Query: 259 VKHC*TTGRFALIHLYSAFDIFCCDTRLSQNRHRPLIVKEHCGPYQIIQFQ**KNK 92
           VKHC T+    L+ L+ A + FC    +S +  RPL      G Y ++ F   +NK
Sbjct: 5   VKHCHTSLHSELVILFYAKNRFC----ISIDHLRPLKSHRTHGHYCLLNFSLRENK 56


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 445 GLRACISLIMSRRRRTTTLIRWSQHHPHEAARPGVHRECKQGKQALLLVR 594
           GL  C  LI++    T  +  W+     E  +  +H EC+Q K+   + R
Sbjct: 296 GLGFCPPLILAY---TVCIYGWAVPSIAELEKEAIHEECRQRKRRTTISR 342


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +3

Query: 354 HXNSFDNVTSLPNLLRQNGIMTGII--GKKHVGPSSVYQFDYEQTEENNHINQVVA 515
           H +  +NV   P  L QNGI   I+  GK  + P      + EQ   N    Q ++
Sbjct: 432 HTSRGENVEDRPQSLLQNGIQPIIMRDGKLALNPEFFKNANGEQQAPNEQAVQAIS 487


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = +2

Query: 488 EQPH*SGGRNITHMKLLAREFIASANKENKPFFLYVAFHDPH 613
           E+P   G +NI+ +++  ++F+ +  ++ +   ++  F DPH
Sbjct: 134 EEPVPGGYKNISVLRMNCQKFLPNFFEKGQLSKMFFCFPDPH 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,827
Number of Sequences: 5004
Number of extensions: 51223
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)