Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0214
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1248 + 28685911-28687719                                         30   1.9  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    29   4.3  
04_04_0401 - 24946801-24947562                                         28   7.5  

>06_03_1248 + 28685911-28687719
          Length = 602

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +3

Query: 177 RRVSQQNMSNAEYR*ISAKRPVVQQCFTSVSSCSPSRAALLTGSPS 314
           RR S    S+++    S  RP V     S SS SPS ++LL+ SPS
Sbjct: 33  RRSSFTAASSSDKPVPSFLRPTVSSSLHSSSSSSPSSSSLLSSSPS 78


>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/47 (29%), Positives = 16/47 (34%)
 Frame = +3

Query: 252 CFTSVSSCSPSRAALLTGSPSHQNGMYGLHHGVHHXNSFDNVTSLPN 392
           C T+V         +LTGS     G  G   G H    F      PN
Sbjct: 696 CMTAVEGAQKKEGIILTGSSEKSIGFLGDSVGTHRTTEFGASKDAPN 742


>04_04_0401 - 24946801-24947562
          Length = 253

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 484 RRTTTLIRWSQHHPHEAARP 543
           R    L+RW QHHP  A  P
Sbjct: 16  RAVAALLRWLQHHPTPAPEP 35


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,744,745
Number of Sequences: 37544
Number of extensions: 361069
Number of successful extensions: 917
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)