Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0214
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38500.1 68417.m05444 expressed protein contains Pfam profile...    29   2.7  
At5g43780.1 68418.m05354 sulfate adenylyltransferase 4 / ATP-sul...    28   4.8  
At3g56040.1 68416.m06226 expressed protein                             28   4.8  
At2g33080.1 68415.m04056 leucine-rich repeat family protein cont...    28   4.8  
At1g52890.1 68414.m05980 no apical meristem (NAM) family protein...    27   8.3  

>At4g38500.1 68417.m05444 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 499

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 85  LIFYFFITETVLSDKVRNVLLLLAD-DGGFEIGAYRNKICQTPNIDELARNGLLFNNASH 261
           L  +  + + V  D +R    +  D +GG  +G +R  + +TP  DE  RNG +    +H
Sbjct: 227 LFCFLMVVDEVSLDFLRKNTTVRKDVEGGIWVGIWRLILLKTPPYDEPRRNGKVPKILTH 286

Query: 262 Q 264
           +
Sbjct: 287 R 287


>At5g43780.1 68418.m05354 sulfate adenylyltransferase 4 /
           ATP-sulfurylase 4 (APS4) identical to ATP sulfurylase
           precursor (APS4) [Arabidopsis thaliana] GI:4633131
          Length = 469

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 282 SRAALLTGSPSHQNGMYGLHHGVHHXNSFDNVTSLPNLLRQNGI 413
           S AA+++GSP   + +   HH   +     +V SLP  + + G+
Sbjct: 4   SAAAIVSGSPFRSSPLIHNHHASRYAPGSISVVSLPRQVSRRGL 47


>At3g56040.1 68416.m06226 expressed protein
          Length = 883

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 264 VSSCSPSRAALLTGSPSHQNGMYGLHHGVHHXNSFDNVTSLPNLL 398
           +S+ SPS   L    P++ N +Y   H      S  N  SLPN++
Sbjct: 531 ISNRSPSSNGLQADFPANTNILYVDLHSAELIGSSSNAKSLPNMV 575


>At2g33080.1 68415.m04056 leucine-rich repeat family protein
           contains leucine rich-repeat domain Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 740

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 545 EFIASANKENKPFFLYVAFHDPHRCGHSDPQYGPFCE 655
           + +A  + + + F  +    D HRC HSD   G +C+
Sbjct: 35  DLVACRSHQIQAFTQFKNEFDTHRCNHSDHSNGVWCD 71


>At1g52890.1 68414.m05980 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM (no apical meristem) GB:CAA63101 from
           [Petunia x hybrida]
          Length = 317

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 342 HGVHHXNSFDNVTSLPNLLRQNGIMTGIIGKKHVGPSSVYQFDYEQTEE 488
           HG+   ++FD  +   N+   N +    +G  HV P+  Y   Y +TEE
Sbjct: 235 HGLADTSNFDWASFAGNVEHNNSVPE--LGMSHVVPNLEYNCGYLKTEE 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,926,224
Number of Sequences: 28952
Number of extensions: 276560
Number of successful extensions: 731
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)