Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0213
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 85 7e-18
SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |... 33 0.028
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 29 0.46
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 28 1.1
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 28 1.1
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 28 1.4
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 27 2.4
SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.4
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.4
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.2
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 26 5.6
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 5.6
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 5.6
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 5.6
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 5.6
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe... 25 7.4
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 7.4
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 25 7.4
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 25 9.8
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 9.8
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 25 9.8
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 9.8
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 9.8
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 25 9.8
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 85.4 bits (202), Expect = 7e-18
Identities = 41/72 (56%), Positives = 51/72 (70%)
Frame = +3
Query: 39 EKSENLPEDGGNEEGSTYHMEKLRRYQLNRLKYFYAVVECDTVTTADKLYNECDGMEYES 218
E+ + ED GNE + M KLR+YQL RL+Y+YAVVECD+V TA +Y CDG EYE+
Sbjct: 268 EEDALIEEDLGNE----FDMVKLRQYQLERLRYYYAVVECDSVRTAKVIYETCDGAEYET 323
Query: 219 SATRLDMRFIPD 254
SA D+RFIPD
Sbjct: 324 SANIYDLRFIPD 335
Score = 83.4 bits (197), Expect = 3e-17
Identities = 43/78 (55%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
Frame = +2
Query: 257 VTFDH-EPREVCSKLPDLRKYKPRLFTTTALQQAKVELTWDATNPNRTEIIKNALDGK-I 430
VTFD E REVC+K P+ KY+PR F T ALQ +KV+L+WDA +P+R ++IK A + I
Sbjct: 337 VTFDDDESREVCTKAPE--KYEPRDFVTDALQHSKVKLSWDAEDPHRKDLIKKAFTSQDI 394
Query: 431 EDLDLKEYLASSSDESED 484
EDLD Y+ASS E ED
Sbjct: 395 EDLDFSAYIASSESEDED 412
>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 33.5 bits (73), Expect = 0.028
Identities = 17/30 (56%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
Frame = +2
Query: 425 KIEDLDLKEYLASSSD-ESEDENQPKKIEA 511
++EDLDL E L+SSSD E +DE Q K+E+
Sbjct: 172 QLEDLDLLEPLSSSSDEEDDDEEQISKLES 201
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 29.5 bits (63), Expect = 0.46
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 383 NPNRTEIIKNALDGKIEDLDLKEYLASSSDESEDENQPKKIEAIFNQT-TTMKIRYKNTN 559
+P+ + I LDG I + + +E+E+E+ PK++ + T T +R+
Sbjct: 27 HPDGSRIATGGLDGTIRIWSTEAINRENENENENEDLPKQLCCMSTHTGTVTSVRFSPNG 86
Query: 560 YYL 568
YL
Sbjct: 87 QYL 89
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 28.3 bits (60), Expect = 1.1
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Frame = +2
Query: 260 TFDH-EPREVCSKLPDLRKYKPRLFTTTALQQAKVELTWDATNPNRTEIIKNALDGKIED 436
TF+ + R S + + ++Y+ L+ T + K ++ +A N E+ N +
Sbjct: 36 TFERTDYRNHTSCMTEAQRYQKGLYRPTKKELKKAKMNGNAVNSK--ELSPNTDNQNTPA 93
Query: 437 LDLKEYLASSSDESEDENQPKKIEAIFNQTTTMKIRYKNTNYYLMKLIKK-RKEENKD 607
K L +E + EN+ K E + + + +N L KL+KK K+ +K+
Sbjct: 94 GPTKHSL--DENEKDKENKKSKKETVSSPAEQLLALTQNQEISLYKLLKKYNKQASKE 149
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 117 QLNRLKYFYAVVECDTVTTADKLYNECDG 203
QL R KY V DTV DK ++ DG
Sbjct: 477 QLERFKYTLRVAGSDTVLPLDKTFSSLDG 505
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 341 ALQQAKVELTWDATNPNRTEIIKNALDGKIEDLDLKEYLASSSDESEDE 487
AL +++ + +++ +L GK +D KE + SSDE +DE
Sbjct: 342 ALNLVRMQKAMAKKEKKKKKVLSISLSGKKVVVDQKEASSESSDEDQDE 390
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 147 LHRSISIYSAGNVAVFPCGMLIPLHFHHLQ 58
LHR IYS + +F C + I +FH LQ
Sbjct: 651 LHRDWKIYS--KIPIFKCHVAIVQYFHDLQ 678
>SPAC4F10.17 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 123
Score = 27.1 bits (57), Expect = 2.4
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Frame = +2
Query: 341 ALQQAKVELTWDATNPNRTEI---IKNALDGKIEDLD--LKEYLASSS---DESEDENQP 496
A + A++ W ATNP T I IK L+ E + +K+ +S DE++D++
Sbjct: 2 AFRAARIAFAWKATNPANTTIRQYIKETLEEAPEKISQTVKKATGKASKKIDENKDKSPQ 61
Query: 497 KKIEAIFNQTTTMKIRYKNTNYYLMKLIKKRKEENKDMK 613
+ E K+T+Y +K K+ K +K
Sbjct: 62 EMAENAKQSVKQTAKDAKDTDYQ-----QKAKDAGKKIK 95
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 2.4
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 410 NALDGKIEDLDLKEYLASSSDESEDENQPKKIEAIFNQTTTMKI----RYKNTNYYLMKL 577
N L+ IE+ K Y S + K +EA N+TT K+ + K+ + +
Sbjct: 18 NFLNELIEEK--KRYEDEKRKISHQKYTDKLLEANDNETTKRKLLVKQKRKSNKEFQSNI 75
Query: 578 IKKRKEENK 604
IKKRK+E +
Sbjct: 76 IKKRKDEER 84
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 212 VFHPVTFIIQLISGSHCITFHHCIEVFQSIQLVTSQFFHVVC*SLFIST 66
++H + L SH I+FH F S L++ F C SLF+S+
Sbjct: 160 LYHQIILSHSLFHISHLISFHFLFFSFLSFPLLS--FILFPCFSLFLSS 206
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 199 SHSLYNLSAVVTVSHSTTA*KYFNLFSW*RRSFSMWY 89
S+S L V+ + HS T ++F L SW R +S++Y
Sbjct: 251 SYSSTQLYCVLCLDHSGTDLEHFELRSW-RECWSVFY 286
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 320 PRLFTTTALQQAKVELTW 373
P + T A+++ KVELTW
Sbjct: 817 PAILTFNAIEKTKVELTW 834
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 5.6
Identities = 21/86 (24%), Positives = 41/86 (47%)
Frame = +2
Query: 344 LQQAKVELTWDATNPNRTEIIKNALDGKIEDLDLKEYLASSSDESEDENQPKKIEAIFNQ 523
L+ A V L+ + ++ EI K L+ + E L + A E E ++ +K+EA +
Sbjct: 305 LEHATVLLSTNQELCDQIEINKKKLEFRKEQLLKQLSNAQEKLEHEQHSRNQKLEAAKQR 364
Query: 524 TTTMKIRYKNTNYYLMKLIKKRKEEN 601
++ YK K I++ +++N
Sbjct: 365 MDNIREEYKVITQERNKKIQETEKKN 390
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = -1
Query: 373 PCKLDLSLLQRCSCEQTRLVLAEVGQLTAYLTGFMIESYISGMNLISRRVALLSYSIPSH 194
P K D +C + L + + L +I Y+S LIS V +IP+
Sbjct: 561 PLKQDGFATLYLNCNSKPMSLGSMFEHYRKLARRLISHYLSKTTLISLLVGCPVPAIPAE 620
Query: 193 SLYNL 179
LYN+
Sbjct: 621 QLYNI 625
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 392 RTEIIKNA-LDGKIEDLDLKEYLASSSDESEDENQPKKIEAIFNQTTT 532
+T ++N L + ED+D +SSS +DE++P + +++ TT
Sbjct: 666 KTMSVENEDLQSETEDIDQVPTSSSSSVTYDDESEPMYVLPLYSLLTT 713
>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 425 KIEDLDLKEYLASSSDESEDENQPKKIEAIFNQTTTMKIRYKNTNY 562
++ DLD +A S S+ P ++ I N +K R+K+TN+
Sbjct: 66 RVPDLDAI-VMACVSIGSKTTETPASVQDICNVVVYLKERFKDTNF 110
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +2
Query: 536 KIRYKNTNYYLMKLIKKRKEENKDMKWKL 622
K+++ N N Y+M+ RK+E ++++ K+
Sbjct: 845 KLKFMNVNSYVMEQYDARKKEIEELESKM 873
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 383 NPNRTEIIKNALDGKIEDLDLKE 451
+P R EI+KN L+ +++D D E
Sbjct: 617 HPQRFEILKNRLEQELKDYDALE 639
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 280 TGFMIESYISGMNLISRRVALLSYSIPSHSLYNLSAVVTVSHSTT 146
+G + S +S N R + + Y + +YN S + VS+STT
Sbjct: 9 SGICLVSLLSSTNAAPRHLYVKRYPV----IYNASNITEVSNSTT 49
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/65 (20%), Positives = 34/65 (52%)
Frame = +2
Query: 431 EDLDLKEYLASSSDESEDENQPKKIEAIFNQTTTMKIRYKNTNYYLMKLIKKRKEENKDM 610
E++++++++ S +D K+E I +++R+ + + ++K K KEE ++
Sbjct: 246 ENIEMEDFVLYESLGLKDLVNQGKLETISFPGRHLQMRWGDFDALVLKYFKDEKEEKTEL 305
Query: 611 KWKLR 625
+ R
Sbjct: 306 EESTR 310
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 473 ESEDENQPKKIEAIFNQTTTMKIRYKNTNYYLMKLIKKRKEENKDMKWK 619
ES+ N K+ + F T+ + K + K +KK K++NK +K
Sbjct: 474 ESDLPNNNKQKDRYFKDKTS-NLSMKENKSFSAKKVKKGKKKNKRQAYK 521
>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 514 YCFNFFGLILIFAFITTRS*ILFEVKVFYFPVECVFNYFSA 392
+ F F+ +LI I S I + YFP++C + S+
Sbjct: 15 FVFPFYYFLLIITEIGFSSCIQYSGLSAYFPIKCTLSLLSS 55
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.0 bits (52), Expect = 9.8
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 320 PRLFTTTALQQAKVELTWDATNPNRTEIIKNALDGKIEDLDLKEYLASSSDESEDENQPK 499
P LFTT+ + + + A+ N + ++NA ++ LDL YL S + D +
Sbjct: 866 PSLFTTSKVYKQHGNIMKVASPENSSNSMENATKSILDKLDLL-YLQLPSSVNHDSSLRN 924
Query: 500 K 502
K
Sbjct: 925 K 925
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 338 TALQQAKVELTWDATNPNRTEIIKNALDGKIEDLDLKEYLASSS 469
TA + ++ + WD T N +I + + L K YL SSS
Sbjct: 281 TACRDEEIRV-WDTTTGNVKDIYSGHYESVTKILQWKSYLISSS 323
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,328
Number of Sequences: 5004
Number of extensions: 50621
Number of successful extensions: 228
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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