Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0213
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616...    66   2e-11
09_03_0107 + 12412772-12413097,12413460-12413732,12414163-12414247     31   1.1  
09_03_0105 + 12400722-12401041,12401427-12401699,12401788-12401827     29   4.4  
03_06_0095 - 31612293-31612607,31612982-31613119,31613229-316133...    29   4.4  
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235...    28   5.8  
01_05_0116 - 18294960-18295078,18295967-18296102,18297167-182972...    28   5.8  
05_01_0484 - 4033169-4033867,4033988-4034051,4035720-4035839,403...    28   7.7  
03_03_0248 + 15819264-15819460,15820691-15820729,15820797-158209...    28   7.7  

>07_03_0697 +
           20759176-20759817,20760592-20760708,20761422-20761696,
           20761906-20762068,20762293-20762421,20762989-20763713,
           20763853-20764081
          Length = 759

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
 Frame = +3

Query: 39  EKSENLPEDGGNEEGSTYHMEKLRRYQLNRLKYFYAVVECDTVTTADKLYNECDGMEYES 218
           +  E   +    E  S     KLR Y+LNRL+Y+YAVV CD+  TA+ LY   DG E   
Sbjct: 314 DDDEEEEDSSDTEHDSEAENNKLRTYELNRLRYYYAVVVCDSSATANHLYMNLDGTELLK 373

Query: 219 SATRLDMRFIPDM*LSIMNPVR-YAVSCPTS 308
           ++   D++FIPD  +   +P R  A   P S
Sbjct: 374 TSNVFDLQFIPDS-MEFKHPARDVATEAPPS 403



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
 Frame = +2

Query: 263 FDHEPREVCSKLPDLRKYKPRLFTTTALQQAKVELTWDATNPNRTEIIKNAL-DGKIEDL 439
           F H  R+V ++ P    YK   F T ALQ +KV+LTWD   P R ++++    D +++DL
Sbjct: 389 FKHPARDVATEAPP--SYKEPNFETRALQHSKVKLTWDDDEPERKKVLRRKFTDDQLDDL 446

Query: 440 DLKEYLASSSDESEDE 487
           D+  YLAS    S+DE
Sbjct: 447 DM--YLASDDSASDDE 460


>09_03_0107 + 12412772-12413097,12413460-12413732,12414163-12414247
          Length = 227

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -2

Query: 144 HRSISIYSAGNVAVFP---CGMLIPLHFHHLQGDFQI 43
           H+SIS+ S     V P   CG  + L FHH  GD  +
Sbjct: 108 HKSISVCSPEKKLVVPESVCGRPLGLQFHHASGDLYV 144


>09_03_0105 + 12400722-12401041,12401427-12401699,12401788-12401827
          Length = 210

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -2

Query: 144 HRSISIYSAGNVAVFP---CGMLIPLHFHHLQGDFQI 43
           H+S+ + S     V P   CG  + L FHH  GD  +
Sbjct: 106 HKSVGVCSPEKKLVVPESVCGRPLGLQFHHASGDLYV 142


>03_06_0095 -
           31612293-31612607,31612982-31613119,31613229-31613315,
           31613410-31613469,31613563-31613662,31613757-31614163,
           31614335-31614805,31614910-31615032,31615396-31615479,
           31615609-31615678,31615767-31615846
          Length = 644

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 458 ASSSDESEDENQPKKIEAIFNQTTTMKIRYKNTNYYLMKLIKKRKEE 598
           A+  + S +   PK  + +  +  T+++  KN   YL+ L +K  E+
Sbjct: 106 AAPVNVSNENPMPKDAKELIREIATLELEVKNMEQYLLTLYRKAFEQ 152


>01_06_0836 -
           32321431-32321556,32321656-32321872,32321975-32323590,
           32323670-32323753,32323834-32324104,32324294-32324547,
           32324709-32324918,32325839-32326024
          Length = 987

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = +2

Query: 293 KLPDLRKYKPRLFTTTALQQA---KVELTWDATNPNRTEIIKNALDGKIEDLDLKEYLAS 463
           ++  LR  K  L       QA   + E+ W+  +  + E+ K A+    E   + EYL +
Sbjct: 493 EIDSLRAQKRELMADADRLQAEKERFEIEWELIDEKKEELQKEAIRIAEERRAITEYLKN 552

Query: 464 SSDESEDENQPKKIEAIFNQTT 529
            SD  + E    +++   N  T
Sbjct: 553 ESDIIKQEKDNLRVQFKSNSET 574


>01_05_0116 -
           18294960-18295078,18295967-18296102,18297167-18297275,
           18298027-18298070,18298305-18298372,18298625-18298695,
           18299068-18300005
          Length = 494

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -3

Query: 290 CIPHGVHDRKLHI-RYEPHI 234
           C+PH V D  LH+ R+ PH+
Sbjct: 134 CLPHAVLDAALHLRRFRPHV 153


>05_01_0484 -
           4033169-4033867,4033988-4034051,4035720-4035839,
           4036631-4036827,4037000-4037170,4037292-4037432,
           4037519-4037602,4037852-4037989,4038111-4038136,
           4038292-4038346,4039094-4039198,4039303-4039371,
           4040038-4040112
          Length = 647

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 424 PVECVFNYFSAVRIGGVPCKLDLSLLQRCSCE 329
           PV  +  +  AV+  G+PC +  SL +RC  E
Sbjct: 188 PVNGLREWLDAVQTAGIPCAVASSLDRRCMIE 219


>03_03_0248 +
           15819264-15819460,15820691-15820729,15820797-15820936,
           15821150-15821225,15822866-15823160,15823236-15823342,
           15823442-15823489,15823568-15823853,15823954-15823961,
           15824083-15824184,15824426-15824553,15824664-15824741,
           15825047-15825145,15825247-15825302
          Length = 552

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +2

Query: 419 DGKIEDLDLKEYLASSSDESEDENQPKKIEAIFNQTTTMKIRYKNTNY----YLMKLIKK 586
           DG  E  DLK       +E EDE   K   +  +    M+   K        +L+ + KK
Sbjct: 174 DGNEESEDLKS--DEEDEEEEDEEDEKGFSSDDSSDERMESIAKEFGVKRYNWLVYMDKK 231

Query: 587 RKEENKDMKWKLRGD 631
            KEE K  K  ++GD
Sbjct: 232 AKEEEKRQKEIIKGD 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,061,161
Number of Sequences: 37544
Number of extensions: 311324
Number of successful extensions: 1095
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)