Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0212
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    28   1.7  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    27   2.9  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    27   2.9  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   3.8  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    26   5.0  

>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -3

Query: 336 NGTIAKTKNFKRHIINLVYCTSFKTRFEIPSYEESEDCAAQNAVSI 199
           NGT+       RH+I    C++     EI  Y+E   CA    + +
Sbjct: 199 NGTMCDITKRPRHVILSYECSTNSDTPEITQYQEVSSCAYSMTIHV 244


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/58 (24%), Positives = 34/58 (58%)
 Frame = +2

Query: 158  ELVLMRPYVIFLIRIETAFCAAQSSDSSYDGISKRVLNEVQ*TKLIMCLLKFLVLAIV 331
            +LV++ P  +F+ R       A    ++ + +SKR+L+ +    +++C+++++ L IV
Sbjct: 1104 DLVIILPIAVFMGRSRPYHRLAHKRPTA-NLVSKRILSPLIGQIVLICIIQYITLRIV 1160


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 562 KHTNVTRSEFQKISEWLRVNTNTIELAKINAIIVDKQRLPQQDF 693
           KH N   S  QK  EW R   N  +++ IN+   D ++    DF
Sbjct: 711 KHLNTIDS--QKAQEWRREINNQFQVSNINSTDRDTKQPKMHDF 752


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 470 PITVWTVLAVIAEARLGIRDGRSITRYGYKQSIRTSLE 583
           P  +W  +A   E+++ +R+ + +  Y YK+   TSL+
Sbjct: 13  PFDLWPSIATDIESKIPLRNLQWVESYQYKKHTITSLD 50


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 529 VSYSQTRFSYYRQNRPNGDWRHNQVTFTL 443
           V+ SQ R +Y  + RP+G W+   V   L
Sbjct: 71  VTCSQDRNAYVYEKRPDGTWKQTLVLLRL 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,178
Number of Sequences: 5004
Number of extensions: 63742
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)