Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0212
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       30   1.8  
SB_41900| Best HMM Match : TIR (HMM E-Value=7.5)                       29   3.1  
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)                     29   4.1  
SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0)               28   7.1  
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)                 28   9.4  

>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +3

Query: 525 ETADQSRVTATSKAYERHSKRIPKNLRMAPSQHEHNRTRQNQCHNCR*ATFATTRLS*QC 704
           E +DQ +     +A ++    I  N     S+H HNR R+  C   R   F  TR    C
Sbjct: 304 EKSDQLQAVQPRQAGKKFDNFIVHN----KSEHNHNRKRKKNCQARRVYRFVPTRKKKHC 359

Query: 705 K 707
           K
Sbjct: 360 K 360


>SB_41900| Best HMM Match : TIR (HMM E-Value=7.5)
          Length = 161

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = -1

Query: 281 TVLRLKHVSRFRRTKSPRTARRKTQSRYG*GKSHTVALAQVQRLLR-RIKPV 129
           T   LKH+S+F+ T +      + Q+++   K+H    +Q+Q+ +R R+ P+
Sbjct: 91  TFANLKHISKFQNTFANSKTHSQIQNKFANSKTH----SQIQKHIRPRLPPI 138


>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1457

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 523  TRRQINHALRLQAKHTNVTRS-EFQKISEWLRVNTNTIEL-AKI 648
            T  QINH  +  A+HT+VTRS + + + E LR+    +   AKI
Sbjct: 1385 TAIQINHPFQRAAQHTDVTRSHDPEVVKEVLRLQERILRFQAKI 1428


>SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0)
          Length = 882

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 523 YSQTRFSYYRQNRPNGDWRHNQ 458
           Y+ T FS  ++NRPNG W   Q
Sbjct: 711 YAVTAFSPIKENRPNGYWAPQQ 732


>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
          Length = 1065

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 663 DNYGIDF-GEFYCVRVDSEPF*DFLEFASSDVRMLCL 556
           + Y ++F G  YC+  D     D LE +SSD++  CL
Sbjct: 339 NQYLVNFNGHMYCMTPDKLTGRDLLELSSSDLKCDCL 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,682,777
Number of Sequences: 59808
Number of extensions: 462300
Number of successful extensions: 1198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)