Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0212
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   1.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.8  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   5.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.4  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 710 VFALS*KSCCGKRCLSTIMALILASSIVFVL 618
           +F +S   CCG    S  M +  AS ++F+L
Sbjct: 62  IFVISFFGCCGAIRESHCMTITFASFLLFIL 92


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -3

Query: 357 GIF*AKDNGTIAKTKNFKRHIINLVYCTSFKTRFE 253
           G+    DN    K   F RH  +L  C    T+FE
Sbjct: 158 GVTLLADNSVSIKDPWFPRHASDLDNCNHLMTKFE 192


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 375 WRLVALGIF*AKD 337
           WRLVA GI  AKD
Sbjct: 22  WRLVADGILNAKD 34


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/36 (16%), Positives = 17/36 (47%)
 Frame = -3

Query: 345 AKDNGTIAKTKNFKRHIINLVYCTSFKTRFEIPSYE 238
           ++ +  +    N + +I+N  Y + +   +  P Y+
Sbjct: 185 SRGSSVVTGMNNIETYIVNTNYSSKYMREYNDPEYK 220


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 533 RSITRYGYKQSIRTSLEANSKKSQN 607
           +++TR  Y + +R   +   +KSQ+
Sbjct: 400 KALTRAAYSRDVRPKYDCTLEKSQD 424


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 533 RSITRYGYKQSIRTSLEANSKKSQN 607
           +++TR  Y + +R   +   +KSQ+
Sbjct: 400 KALTRAAYSRDVRPKYDCTLEKSQD 424


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 533 RSITRYGYKQSIRTSLEANSKKSQN 607
           +++TR  Y + +R   +   +KSQ+
Sbjct: 400 KALTRAAYSRDVRPKYDCTLEKSQD 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,471
Number of Sequences: 438
Number of extensions: 5013
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)