Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0212
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative ...    30   1.9  
At1g35930.1 68414.m04462 replication protein-related weak simila...    30   1.9  
At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5) M...    28   5.8  
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p...    28   7.7  

>At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative
           similar to RNA-directed RNA polymerase [Lycopersicon
           esculentum] gi|4038592|emb|CAA71421
          Length = 1133

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +3

Query: 312 FWFWQSCHCLSLKIFLRRLISTM-----GSPRRLEIFPLNYCITPRIWSRVKV 455
           FW W+S  C  +++    +I T+     G    ++ F L     P+++ RV V
Sbjct: 145 FWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPKVFKRVTV 197


>At1g35930.1 68414.m04462 replication protein-related weak
           similarity to Replication Protein A 70  kDa DNA-binding
           subunit (RP-A) (RF-A) (Replication factor-A protein 1)
           (Single-stranded DNA-binding protein) (DMRPA1)
           (GI:2498844)(SP:Q24492) [Drosophila melanogaster]
          Length = 261

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 702 IVMKVLLWQTLLIDNYGIDFGEFYCVRVDSEPF*DFLEFASSDVRMLCL 556
           +V  V  W+   +D   +   EF C R+  +P   + +FAS   +ML +
Sbjct: 211 VVCAVRFWRIASVDGENVLKSEFGCSRLHIDPSFPYFDFASGVSKMLMI 259


>At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5)
           Monovalent cation:proton antiporter family 2 (CPA2
           family) member, PMID:11500563; related to
           glutathione-regulated potassium-efflux system protein
           [Escherichia coli] GP|606284|gb|AAA58147
          Length = 568

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 290 LIMCLLKFLVLAIVPLSFAQNIPKATNLHNG-LTEKIGNFSIELLYHTSNLEQSKGNLIM 466
           +++ ++K  + A+V  +F  N+    + H G L  +IG F+  LL   SNL   +G + +
Sbjct: 453 ILVIVIKTAIAAVVVKAFRYNM--RISFHVGVLLAQIGEFAFVLLSRASNLHVIEGKMYL 510


>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
            subunit, putative similar to contains 6 WD-40 repeats
            (PF00400); katanin p80 subunit (GI:3005601)
            [Strongylocentrotus purpuratus]
          Length = 974

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
 Frame = +2

Query: 341  FAQNIPKATNLHNGLTEKIGNFSIELLYHTSNLEQSKGNLIMSPITVWTVLAVIAEARLG 520
            F+Q +P  T+L    TE+  N S+++L     L    G +I S ++   ++ V   A   
Sbjct: 870  FSQLVPVLTSLLGSRTERPVNVSLDMLL---KLVAVFGTVIRSTVSAPRIVGVDLHA--- 923

Query: 521  IRDGRSITRY--GYKQSIRTSLEANSKKSQNGSESTRTQ*NSPKSM 652
              + R++     G  Q  + S  +  K+  N  + +RT+ +S +++
Sbjct: 924  --NERNLPNLFCGTAQDSKNSSSSRKKRRSNNKKGSRTKPSSSRTI 967


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,747,632
Number of Sequences: 28952
Number of extensions: 319367
Number of successful extensions: 801
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)