Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0210
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    27   3.8  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   8.7  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   8.7  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   8.7  

>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 630 VSYDFIFISFCVLSLKSRCPNSHKVK-LKNSCINIVQARD 514
           ++YDF+ +  CV  L S C   +K + + N  +N     D
Sbjct: 210 LAYDFLLMQQCVKQLPSNCWQKYKARQICNDIMNTFHPND 249


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
 Frame = -3

Query: 418 WFSFCPDSAIAYFHRSYYSEQKKIVL----EQLHPSEKXXXXXXXXXXXXXXXXXXXYSI 251
           W  F   +A+   HR YY++   I+     E+  PS                       +
Sbjct: 381 WSKFTATAALGVIHRGYYNQAMNILRPYLPEEDAPSSSTYSEGGAFYAMGLIHANHGRGV 440

Query: 250 EGYKFTSLIENKDSIVQY 197
             Y    L   +D IVQY
Sbjct: 441 TEYLREQLKHTEDEIVQY 458


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 405  ALTLPLPISIGHIIQNKKKSF 343
            +LT P+P+S+G    N+KK F
Sbjct: 1534 SLTSPIPVSVGIDAFNEKKKF 1554


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 122 LVLYCVFLIFYDRSNLYHTAQNLLIVL---YYAVLIF 223
           +++Y VF +FY      H + N  IVL   Y+  LIF
Sbjct: 682 IMIYFVFCVFYISLIPLHNSDNSEIVLGNNYFTTLIF 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,731
Number of Sequences: 5004
Number of extensions: 58129
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)