Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0210
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743...    31   0.98 
01_01_0079 - 603019-603129,603302-603367,603489-603554,603681-60...    31   0.98 
01_06_0112 + 26558618-26558778,26565370-26565580,26565665-265658...    28   6.9  

>10_08_0573 +
           18872720-18872781,18873261-18873610,18873917-18874334,
           18875172-18877180,18877390-18877398,18880291-18880398,
           18880399-18880469,18880769-18881785
          Length = 1347

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = -1

Query: 495 LGLFWQLASNLYFLQRLKMLLIKQCDGLAFALTLPLPISIGHIIQNKKKSFWSSYIPQ 322
           + L +QL  ++    +LKM ++++C+G+ F     +  S+GH +  K KS W + + +
Sbjct: 262 MDLTYQLKLSIETSIKLKMEVLQKCNGVPF-----IAASLGHRLHQKDKSKWVAILQE 314


>01_01_0079 -
           603019-603129,603302-603367,603489-603554,603681-603824,
           603932-604429
          Length = 294

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -1

Query: 705 ALWMTAVAPGSVENSTPVAGGG 640
           A+WM A A   VEN++ VAGGG
Sbjct: 94  AMWMDAAAGAMVENTSVVAGGG 115


>01_06_0112 +
           26558618-26558778,26565370-26565580,26565665-26565826,
           26566650-26566874,26566960-26567073
          Length = 290

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +2

Query: 50  LLSSMIQN*KINKKTSYCITIQIY---LVLYCVFLI--FYDRSNLYHTAQNLLIVLYYAV 214
           L+ S+ Q   ++ KT     I +Y   LVLYCV L+  F     + HT   LL+ +   +
Sbjct: 81  LMFSLCQRHGVDGKTVGWAPIIVYSIGLVLYCVLLVMRFCPDGTICHTTIALLLGITLLL 140

Query: 215 LIF 223
           L+F
Sbjct: 141 LLF 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,131,680
Number of Sequences: 37544
Number of extensions: 335594
Number of successful extensions: 895
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)