Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0210
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29) 29 3.0
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 29 3.0
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 29 4.0
SB_22775| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082) 29 4.0
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 29 4.0
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 29 4.0
SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6) 29 5.3
SB_58576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16) 28 7.0
SB_48902| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_40983| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_40552| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_38731| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_34180| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.0
SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_32643| Best HMM Match : Carla_C4 (HMM E-Value=9.9) 28 7.0
SB_30890| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_29924| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 28 7.0
SB_24244| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_36764| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_36762| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053) 28 7.0
SB_29800| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4) 28 7.0
SB_24298| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_19305| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_14496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
>SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)
Length = 1130
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -1
Query: 597 VLSL-KSRCPNSHKVKLKNSCINIVQARDYGFHCALGLF-WQLASNLYFLQRLKMLLIKQ 424
VLS+ K +C S+ S I + DY C LG F L NL+ L K +KQ
Sbjct: 361 VLSITKVKCGTSNCTCNMASTITTLPVMDYTIACELGTFNLNLGYNLFVLSDGKACKVKQ 420
Query: 423 CDGLAF 406
D L +
Sbjct: 421 GDVLGW 426
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 672 HYLEPLRSSTVRFQRSFLPRTIRLWN 749
HY P + + F+ SF+PR IRLWN
Sbjct: 733 HYDIPYARTNI-FKYSFVPRAIRLWN 757
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ + F SF PRTIR WN
Sbjct: 1637 LQANILAFNYSFFPRTIRTWN 1657
>SB_22775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFDMSFIPRTIRTWN 124
>SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 672 HYLEPLRSSTVRFQRSFLPRTIRLWN 749
H L+S+ + + SF PR IR+WN
Sbjct: 127 HSFLQLQSNILSYNYSFFPRAIRIWN 152
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ + F SF PRTIR WN
Sbjct: 1083 LQANILAFNYSFFPRTIRTWN 1103
>SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
Length = 506
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 672 HYLEPLRSSTVRFQRSFLPRTIRLWN 749
H L+S+ + + SF PR IR+WN
Sbjct: 446 HSFLQLQSNILSYNYSFFPRAIRIWN 471
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 672 HYLEPLRSSTVRFQRSFLPRTIRLWN 749
H L+S+ + + SF PR IR+WN
Sbjct: 1432 HSFLQLQSNILSYNYSFFPRAIRIWN 1457
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 672 HYLEPLRSSTVRFQRSFLPRTIRLWN 749
H L+S+ + + SF PR IR+WN
Sbjct: 392 HSFLQLQSNILSYNYSFFPRAIRIWN 417
>SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)
Length = 231
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 636 KGRRPPPE*SSPHYLEPLRSSTVRFQRSFLPRTIRLWN 749
K R P + L + T ++ SFLPR +RLWN
Sbjct: 174 KPSRALPRTQHSEFYTILNARTDIYKYSFLPRALRLWN 211
>SB_58576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
Length = 453
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 398 LQANVNAFGMSFIPRTIRTWN 418
>SB_48902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_40983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_40552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_38731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_34180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 522
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 467 LQANVNAFGMSFIPRTIRTWN 487
>SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 208 LQANVNAFGMSFIPRTIRTWN 228
>SB_32643| Best HMM Match : Carla_C4 (HMM E-Value=9.9)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_30890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_29924| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 837 LQANVNAFGMSFIPRTIRTWN 857
>SB_24244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 442 LQANVNAFGMSFIPRTIRTWN 462
>SB_36764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_36762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_31615| Best HMM Match : GCC2_GCC3 (HMM E-Value=0.053)
Length = 870
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 496 CTMKSIISSLYYIYTAVFKFYLVRIWTSTLQRQDTKGNKNKIVAY 630
C+M +I+ ++ +IY + K YL R + +L+ + + K V Y
Sbjct: 335 CSMTAIVIAIVWIYYGIRKIYLKRKTSFSLREKKAALDATKEVCY 379
>SB_29800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)
Length = 443
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 681 EPLRSSTVRFQRSFLPRTIRLWN 749
+ L S+ + F SF PR IR WN
Sbjct: 270 QQLHSNILSFNYSFFPRAIRAWN 292
>SB_24298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_19305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 104 LQANVNAFGMSFIPRTIRTWN 124
>SB_14496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 687 LRSSTVRFQRSFLPRTIRLWN 749
L+++ F SF+PRTIR WN
Sbjct: 55 LQANVNAFGMSFIPRTIRTWN 75
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,175,454
Number of Sequences: 59808
Number of extensions: 396923
Number of successful extensions: 1063
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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