Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0210
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine rece...    29   4.7  
U23524-6|AAC46820.1|  383|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z83218-2|CAB05687.1|  705|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily ass...    28   8.1  

>U29097-8|AAA68415.1|  341|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 28 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 100 LYNYSNLFSIVLCFSYFL 153
           LY Y+NLFS   CFS FL
Sbjct: 106 LYYYTNLFSSFCCFSLFL 123


>U23524-6|AAC46820.1|  383|Caenorhabditis elegans Hypothetical
           protein C29F5.1 protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -1

Query: 519 RDYGFHCALGLFWQLASNLYFLQRLKMLLIKQCDGLAFALTLPLPISIGHIIQNKKKS 346
           R  G H + G F+QL S  Y   R+ +     C   A     P+P+    ++  KKKS
Sbjct: 178 RPRGAH-STGPFFQLVSYQYGQFRILVRYEVDCADYAAVKATPVPVDKSEVLPEKKKS 234


>Z83218-2|CAB05687.1|  705|Caenorhabditis elegans Hypothetical
           protein C31A11.5 protein.
          Length = 705

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 89  KTSYCITIQIYLVLYCVFLIFYDRSNLYHTAQNLLIVLYYAV 214
           + SYC  I  Y+VLY ++L+  D S   H   +  I +YYAV
Sbjct: 595 RLSYCAYIVHYVVLY-MYLMIGDAS--IHFYSSFQIFMYYAV 633


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 679 WSHCGHPQCVSRDLFCH 729
           WS C HP CV+  +F H
Sbjct: 12  WSRCVHPSCVAWVIFIH 28


>U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 130 protein.
          Length = 756

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 134 CVFLIFYDRSNLYHTAQNLLIVL-YYAVLIFYERSKFIAFNT 256
           C+FL FYD  +L+H +    I   + A+ +  +   F+  NT
Sbjct: 711 CIFLNFYDNHDLWHLSSAFAIFFSFTAINVIDDDLMFVMRNT 752


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,376,281
Number of Sequences: 27780
Number of extensions: 321844
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)