Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0209
         (482 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SJI9 Cluster: Chromosome 4 SCAF14575, whole genome sh...    33   4.5  
UniRef50_Q1NCJ8 Cluster: Superfamily I DNA and RNA helicase and ...    33   4.5  
UniRef50_Q1GW96 Cluster: Adenylate/guanylate cyclase precursor; ...    33   4.5  
UniRef50_Q0DGF7 Cluster: Os05g0534900 protein; n=3; Oryza sativa...    33   4.5  

>UniRef50_Q4SJI9 Cluster: Chromosome 4 SCAF14575, whole genome shotgun
            sequence; n=2; Tetraodontidae|Rep: Chromosome 4
            SCAF14575, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 1986

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -1

Query: 281  RVSKTNVTTTSQPKHVYIIQTQILRILIASFLISLRLPLGALFHTNKIFLLLRWVDEPTW 102
            +  KT   + + P  + ++Q Q  + +  S L SL LPL    H  K  LL  W+ E  W
Sbjct: 1008 KAKKTQDVSLASPSFMVLLQEQCSQPI--SSLASLHLPLRCSCHGRKGALLQSWMSEKQW 1065


>UniRef50_Q1NCJ8 Cluster: Superfamily I DNA and RNA helicase and
           helicase subunit; n=1; Sphingomonas sp. SKA58|Rep:
           Superfamily I DNA and RNA helicase and helicase subunit
           - Sphingomonas sp. SKA58
          Length = 1659

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 167 LGALFHTNKIFLLLRWVDEPTWC*VVTGAHGHLER 63
           +GA++  + I ++  W+D P    ++ GA GHL+R
Sbjct: 570 VGAMWLGDAIVMIQEWIDRPDLASLIDGASGHLDR 604


>UniRef50_Q1GW96 Cluster: Adenylate/guanylate cyclase precursor;
           n=2; Sphingomonadaceae|Rep: Adenylate/guanylate cyclase
           precursor - Sphingopyxis alaskensis (Sphingomonas
           alaskensis)
          Length = 699

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 251 SQPKHVYIIQTQILRILIASFLISLRLPLGALFHTNKIFLLLRWVDEP 108
           S P  ++  Q + L   IA    +   P   LFHT+   ++ RW D P
Sbjct: 167 SNPNTIFYEQQKFLESFIADVATARTRPTSVLFHTDDDSVIRRWPDRP 214


>UniRef50_Q0DGF7 Cluster: Os05g0534900 protein; n=3; Oryza
           sativa|Rep: Os05g0534900 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 882

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = -1

Query: 311 YTRYNIRLP*RVSKTNVTTTS---QPKHVYIIQTQILRIL-IASFLISLRLPLGALFHTN 144
           Y+  N+R    V+  N+  T    Q  H Y  +T  L    + + LIS+   +G+L H  
Sbjct: 367 YSGLNLREGDLVTVINICQTKEEVQQMHAYTFRTGDLSYTNVCNSLISIYSEIGSLIHAE 426

Query: 143 KIFLLLRWVDEPTWC*VVTGAHGHLE 66
            IF  ++  D  +W  V+ G   +L+
Sbjct: 427 SIFKTMQSRDVISWTAVMAGCVKNLQ 452


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,529,545
Number of Sequences: 1657284
Number of extensions: 8727778
Number of successful extensions: 18383
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18378
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)