Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0209
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    27   1.1  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    26   3.4  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    26   3.4  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   7.9  

>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 17/61 (27%), Positives = 34/61 (55%)
 Frame = -1

Query: 314  QYTRYNIRLP*RVSKTNVTTTSQPKHVYIIQTQILRILIASFLISLRLPLGALFHTNKIF 135
            Q  +Y+I L    ++ N+T  +  +   +I+++   +L  SFL +    L  LF+T+K+F
Sbjct: 853  QQLKYSINLLITAARENLTIKNSLEAYVVIKSKSQSLL--SFLKNYSSDLPFLFNTSKVF 910

Query: 134  L 132
            +
Sbjct: 911  I 911


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 285 LEGFQNQCYDNKSTEARLHNTNTNSTH 205
           L+G  +QC    ST  +LHN    STH
Sbjct: 134 LQGNISQCLSVASTFQKLHNMYMGSTH 160


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 228 NTNTNSTHTYCEFFNFSTFTARGAVPYK 145
           N N N  H  C   + ST T R   P+K
Sbjct: 90  NANENIPHVQCRNDSQSTVTTRNPTPFK 117


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 296 IRLP*RVSKTNVTTTSQPKHVYIIQTQILRI 204
           IR P  V+K++V+ +  P H   I + ILRI
Sbjct: 158 IRDPRLVTKSDVSLSKVPTHHPFINSNILRI 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,307
Number of Sequences: 5004
Number of extensions: 39320
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)