Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0209
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0204 + 26354319-26356967                                         33   0.16 
12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888     29   1.5  
01_06_0249 + 27868897-27871599                                         28   4.5  
04_04_0935 - 29509135-29511732                                         27   6.0  
12_02_0538 + 20134594-20136042                                         27   7.9  
05_05_0091 + 22319411-22320901                                         27   7.9  

>05_06_0204 + 26354319-26356967
          Length = 882

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = -1

Query: 311 YTRYNIRLP*RVSKTNVTTTS---QPKHVYIIQTQILRIL-IASFLISLRLPLGALFHTN 144
           Y+  N+R    V+  N+  T    Q  H Y  +T  L    + + LIS+   +G+L H  
Sbjct: 367 YSGLNLREGDLVTVINICQTKEEVQQMHAYTFRTGDLSYTNVCNSLISIYSEIGSLIHAE 426

Query: 143 KIFLLLRWVDEPTWC*VVTGAHGHLE 66
            IF  ++  D  +W  V+ G   +L+
Sbjct: 427 SIFKTMQSRDVISWTAVMAGCVKNLQ 452


>12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888
          Length = 725

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +3

Query: 237 VLRLTC--CRNIGFGNPLG*SDVISRVLLLLNVARTHCIPIVSYHFIAYARYIDKMNYTH 410
           VL L C  CR  G G      D ++   LL   A +  +P+ SYH +  AR  +  ++TH
Sbjct: 324 VLFLCCARCRRSGGGGGRSGFDRLAAKRLLSEAASSSGVPVYSYHEV--ARATNSFSHTH 381


>01_06_0249 + 27868897-27871599
          Length = 900

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 234 LHNTNTNSTHTYCEFFNFSTFTARGAVPYK*DFFIA*MGGRAHLVLSGYWSPWTSR 67
           +H T   +   Y EF+N +       +PYK  F +        LV  GYW P T +
Sbjct: 279 VHCTANGAVRAYVEFYNDTKM-----LPYKGRFMVV----EEALVADGYWDPTTGQ 325


>04_04_0935 - 29509135-29511732
          Length = 865

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 215 ILRILIASFLISLRLPLGALFHTNKIFLLLRWVDEPTWC*VVTGAHGH 72
           IL + +A+  I++    G +    K+F LL   D  +W  ++TG   H
Sbjct: 536 ILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQH 583


>12_02_0538 + 20134594-20136042
          Length = 482

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 342 CIPIVSYHFIAYARYIDKMNYTHI*KCKSVVSL 440
           C P+++   +++  YID     ++  CK +VSL
Sbjct: 95  CCPLLTDLILSFCYYIDDSGLAYLTDCKKLVSL 127


>05_05_0091 + 22319411-22320901
          Length = 496

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = -2

Query: 133 YCLDGW-TSPPGVKW--LLEP 80
           +C   W TSPPGV W  LLEP
Sbjct: 304 HCQQPWQTSPPGVDWRKLLEP 324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,007,560
Number of Sequences: 37544
Number of extensions: 223331
Number of successful extensions: 391
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)