Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0209
         (482 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28053| Best HMM Match : MMPL (HMM E-Value=0.097)                    28   4.6  
SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)                     27   6.1  
SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)               27   6.1  
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_28053| Best HMM Match : MMPL (HMM E-Value=0.097)
          Length = 326

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 331 ATFNNNNT-RDITSDYPRGFPKPMLRQQVNRSTFT*YKHKFY 209
           A FN N T RD+ +   +  P   +  Q N S F+  KHK Y
Sbjct: 85  AIFNQNITFRDMATGQIKEIPVSTVASQKNTSAFSAIKHKQY 126


>SB_51866| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 948

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 281 RVSKTNVTTTSQPKHVYIIQTQI 213
           + S TN++TT+QP H+ ++ + +
Sbjct: 618 QTSLTNISTTNQPPHISVVSSSL 640


>SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)
          Length = 2056

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 479 YETRTDNKNNITV*GNYRFTFLYVSIVHFIYITCISNEMVTDDRNTVRSCNI 324
           Y T+ D  N+  +    ++  L+ S  HF    C+ +  V+D R  VRSC +
Sbjct: 793 YATKLDRGNSSLL----KWQGLFGSTTHFSRKKCLFSNTVSDARWKVRSCRL 840


>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 157 CSIQIRFFYCLDGWTSPPGV 98
           CS+ + F+YC   W+S  GV
Sbjct: 62  CSVHLDFYYCTCVWSSMAGV 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,926
Number of Sequences: 59808
Number of extensions: 287213
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)