Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0209
         (482 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23330.1 68416.m02943 pentatricopeptide (PPR) repeat-containi...    29   1.2  
At3g28050.1 68416.m03501 nodulin MtN21 family protein similar to...    28   3.8  
At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containi...    27   5.0  
At2g34280.1 68415.m04194 S locus F-box-related / SLF-related con...    27   5.0  

>At3g23330.1 68416.m02943 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 679

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -1

Query: 239 HVYIIQTQI-LRILIASFLISLRLPLGALFHTNKIFLLLRWVDEPTWC*VVTG--AHGH 72
           H Y+++      I IAS L+ +    G +    KIF  +  +DE +W  ++ G   HGH
Sbjct: 330 HGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGH 388


>At3g28050.1 68416.m03501 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 367

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 233 YIIQTQILRILIASFLISLRLPLGALFHTNKIFLLLRWVDEPTW 102
           YI+QTQI+R   A F +     +G  F T  + L     D   W
Sbjct: 197 YIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEGNDLGAW 240


>At3g47840.1 68416.m05215 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 706

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 239 HVYIIQTQILR-ILIASFLISLRLPLGALFHTNKIFLLLRWVDEPTWC*VVTG 84
           H Y ++T +L  + + S L+ +   +G +  + ++F  + + +  TW  ++TG
Sbjct: 131 HAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTAIITG 183


>At2g34280.1 68415.m04194 S locus F-box-related / SLF-related
           contains Pfam PF00646: F-box domain; contains weak hit
           to TIGRFAM TIGR01640 : F-box protein interaction domain;
           weakly similar to  self-incompatibility (S-) locus F-box
           (GI:29420811) [Prunus mume]
          Length = 391

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 216 NSTHTYCEFFNFSTFTARGAVP 151
           N+T T+CE F+F+T   R  VP
Sbjct: 201 NNTSTFCEVFDFTTKAWRFVVP 222


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,010,050
Number of Sequences: 28952
Number of extensions: 191546
Number of successful extensions: 383
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)