Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0208
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     29   0.87 
SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27...    27   3.5  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   4.7  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   4.7  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   4.7  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    25   8.1  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    25   8.1  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    25   8.1  

>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 221 ILLQHTVC--GIHSVSCLVLREPIYGGCIASSLVSALMNFIFNTQGL 355
           +L   T C  GI +V CL L +P    C+AS       N  FNT  L
Sbjct: 8   LLFMGTGCSSGIPNVCCLTLEKPTCRTCLASLTPEGRKNNRFNTSVL 54


>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 7/31 (22%), Positives = 19/31 (61%)
 Frame = +3

Query: 552 KQHCAYSIINGWITYYRFMCDIGKTKKHTXI 644
           K H  YS+++G++ +++    + K +K+  +
Sbjct: 90  KDHTIYSLVSGYVKFFQMDVSLRKRRKYVGV 120


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 258 TE*IPQTVCCSRINQQLRKLLVYKVATLCTKNCMRL 151
           T  IP+  C   I  +L  +L Y +  LC   C  L
Sbjct: 803 TSSIPKAFCAVEIVDRLAAMLNYNLQALCGPKCSNL 838


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
 Frame = -3

Query: 516 IHGLPITAMVNKVKPCVTIMASPIV----YVFGNLVRDHLSIVLYKYTAVREKDNDVVKP 349
           +HG P T     V+   ++ ++P+     Y F +   DHL   L  +       N V  P
Sbjct: 427 LHGNPFTGKTKAVEEVASLFSAPVFTISSYEFADATADHLEAKLDMFV-----QNVVKSP 481

Query: 348 CVL 340
           C +
Sbjct: 482 CAI 484


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +2

Query: 134 FTARIIN-LIQFFVQ----SVATLYTSSLRSCWFILLQHTVCGIHSVSCLVLREPIYGGC 298
           FT +I   L  FF Q    +V T+Y +     +F+L +H +   H  +  V+R+  + G 
Sbjct: 309 FTLKIHERLASFFSQKRYRNVVTIYGALNEPNFFVLDEHKITDWHKQAYAVIRQSNFTGL 368

Query: 299 IASS 310
           I+ S
Sbjct: 369 ISLS 372


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 171 YKVSPLYTLVAYVAVGLFCYSILFVVFILYHVWYS 275
           Y ++PL+  +   +VGL   +I+  +F+L +++ S
Sbjct: 37  YALTPLFYWIRSTSVGLLLITIICHLFLLLNIFIS 71


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 109 QATGYGVVLYCPHY*SH 159
           +ATGYGVV Y  H   H
Sbjct: 194 EATGYGVVYYVKHMIEH 210


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 254 SVSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLTAVYLYSTML 409
           S+S   ++   +GG I + L   + + +  +   +  +SFS+  V +Y TML
Sbjct: 17  SLSASQIQMLAFGGIIGTGLFLGIGSSLAESGPASLLISFSVLGVSVYCTML 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,399
Number of Sequences: 5004
Number of extensions: 62218
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)