Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0208
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34553| Best HMM Match : F5_F8_type_C (HMM E-Value=8.3e-22)          35   0.075
SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)               32   0.40 
SB_42833| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 28   6.5  

>SB_34553| Best HMM Match : F5_F8_type_C (HMM E-Value=8.3e-22)
          Length = 667

 Score = 34.7 bits (76), Expect = 0.075
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 442 HYRRSHDCNTGFDFIHHCSYWKAMNILHDPNEDMNLISSIVLTALSTVG 588
           HY  S+DC+  +  ++H  YW   +   D    +++IS  ++ A++T G
Sbjct: 379 HYSASYDCDARYGRLNHAKYWAPRSPGGDHYLQIDMISVYIVCAVATQG 427


>SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)
          Length = 979

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 442 HYRRSHDCNTGFDFIHHCSYWKAMNILHDPNEDMNLISSIVLTALSTVG 588
           HY   +DC+  +  ++H  YW   +   D    +++IS  ++ A++T G
Sbjct: 850 HYSDLYDCDARYGRLNHAKYWAPRSEEGDHYLQIDMISVYIVCAVATQG 898


>SB_42833| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 641

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
 Frame = +3

Query: 186 LYTLVAYVAVGLFCYSILFVVF--ILYHVWYSES 281
           LY++VA+++VG+   +++ VV+  I+Y +W   S
Sbjct: 154 LYSVVAWLSVGIAPITVMAVVYTRIIYKLWIKSS 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,827,875
Number of Sequences: 59808
Number of extensions: 462361
Number of successful extensions: 1027
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)