Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0208
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine re...    31   0.82 
AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF068709-3|AAC19254.1|  332|Caenorhabditis elegans Serpentine re...    28   5.8  
Z83116-12|CAB60294.2|  346|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z81047-15|CAB02826.2|  346|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z50872-8|CAA90758.1|  865|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AL031269-3|CAA20334.1|  865|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine re...    28   7.6  
AB055111-1|BAB62292.1|  865|Caenorhabditis elegans VHA-6 protein.      28   7.6  

>AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein29 protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 15/71 (21%)
 Frame = +3

Query: 117 GLWCCALLPALLISYNFLYKV--SPLYTLV-----AYVAVGL-FCYSILFVVFI------ 254
           GLWCC+ + A+++  N L  +  S L TL+      Y+ +     Y + FVVF       
Sbjct: 117 GLWCCSCIIAMILVMNRLLDLSKSTLSTLIFEGNRTYLVMSFTILYGLYFVVFTPPIAFS 176

Query: 255 -LYHVWYSESL 284
             YH W+ + L
Sbjct: 177 SKYHTWFFDPL 187


>AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical
           protein B0524.2 protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 266 LVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLT 382
           L+ R   Y GC + SLV+A+  FIFN + L   +SF  T
Sbjct: 123 LMKRVERYSGCSSGSLVAAM--FIFNPEKLVFLVSFRKT 159


>Z81062-6|CAB02949.2|  320|Caenorhabditis elegans Hypothetical
           protein F15A4.7 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/43 (25%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 156 SYNFLYKVSPLYTLVAYVAVGLFCY-SILFVVFILYHVWYSES 281
           +Y+ L++ +  +    Y++VGLFC+ S+L ++ I    ++ ++
Sbjct: 17  NYDILFENAIYFVTACYLSVGLFCHISLLKIILISDRKYFKDN 59


>U64845-5|AAC48027.1|  581|Caenorhabditis elegans Hypothetical
           protein F45F2.6 protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/76 (25%), Positives = 30/76 (39%)
 Frame = +2

Query: 125 VLCFTARIINLIQFFVQSVATLYTSSLRSCWFILLQHTVCGIHSVSCLVLREPIYGGCIA 304
           + C     I ++ F       LY     +    L +  V  +H+V   V  EP++ G  A
Sbjct: 83  IFCVLMYSIAILYFIYLYAYILYPIVFNTILLYLERMRVLNVHTVKRWVQPEPVFTGEGA 142

Query: 305 SSLVSALMNFIFNTQG 352
            +L   L   +F T G
Sbjct: 143 GTLYLRLGTVLFGTLG 158


>AF068709-3|AAC19254.1|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein28 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 117 GLWCCALLPALLISYNFLYKVS-PLYTLVAYVAVGLFCYSILFVVFILYHVWYSE 278
           GLWCC+ + A+ +  N L  ++ P      +     F   +L +++ LY V++++
Sbjct: 117 GLWCCSCIIAMSLVVNRLLDLTKPRICAAIFEGNKTFVVMMLPIMYGLYFVFFTK 171


>Z83116-12|CAB60294.2|  346|Caenorhabditis elegans Hypothetical
           protein C41G6.2 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 159 YNFLYKVSPLYTLVAYVAVGLFCYSILFVVFILYH 263
           YN LY V    TL+        C+S LF +FIL H
Sbjct: 13  YNVLYAVEQFGTLIQDYFWIASCFSNLFHLFILLH 47


>Z81047-15|CAB02826.2|  346|Caenorhabditis elegans Hypothetical
           protein C41G6.2 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 159 YNFLYKVSPLYTLVAYVAVGLFCYSILFVVFILYH 263
           YN LY V    TL+        C+S LF +FIL H
Sbjct: 13  YNVLYAVEQFGTLIQDYFWIASCFSNLFHLFILLH 47


>Z50872-8|CAA90758.1|  865|Caenorhabditis elegans Hypothetical protein
            VW02B12L.1 protein.
          Length = 865

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +2

Query: 149  INLIQFFVQSVATLYTSSLRSCWFILLQHTVCGIHSVSCLVLREPI-YGGCIASSLVSAL 325
            I+ I+F +  V+  +T+S    W + L H       +  +VLR  +  GG   S+ ++ L
Sbjct: 747  IHTIEFVLGCVS--HTASYLRLWALSLAHAQLS-DVLWTMVLRMSLTMGGWGGSAAITIL 803

Query: 326  MNFIFNTQGLTTSLSFSLTAVYLYSTMLRW 415
              FIF+   +   +     + +L++  L W
Sbjct: 804  FYFIFSILSVCILILMEGLSAFLHAIRLHW 833


>AL031269-3|CAA20334.1|  865|Caenorhabditis elegans Hypothetical
            protein VW02B12L.1 protein.
          Length = 865

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +2

Query: 149  INLIQFFVQSVATLYTSSLRSCWFILLQHTVCGIHSVSCLVLREPI-YGGCIASSLVSAL 325
            I+ I+F +  V+  +T+S    W + L H       +  +VLR  +  GG   S+ ++ L
Sbjct: 747  IHTIEFVLGCVS--HTASYLRLWALSLAHAQLS-DVLWTMVLRMSLTMGGWGGSAAITIL 803

Query: 326  MNFIFNTQGLTTSLSFSLTAVYLYSTMLRW 415
              FIF+   +   +     + +L++  L W
Sbjct: 804  FYFIFSILSVCILILMEGLSAFLHAIRLHW 833


>AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 19 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 36  SLCMSVDYTISRNLRDGGIGTRPISSNGLWCCALLPALLISYNFLYKV-SPLYTLVAYVA 212
           S C+S +   S   R         SS GL    +L    + Y+  + + S +  LV  + 
Sbjct: 71  SCCVSFETATSWYYRTAQASQVVFSSMGL---VVLTVYALKYSSKHMLPSNVRVLVNIIL 127

Query: 213 VGLFCYSILFVVFILYHVWYS 275
           + +F +SI  ++F +YH++ S
Sbjct: 128 ILMFTHSIDMIIFHVYHIFRS 148


>AB055111-1|BAB62292.1|  865|Caenorhabditis elegans VHA-6 protein.
          Length = 865

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +2

Query: 149  INLIQFFVQSVATLYTSSLRSCWFILLQHTVCGIHSVSCLVLREPI-YGGCIASSLVSAL 325
            I+ I+F +  V+  +T+S    W + L H       +  +VLR  +  GG   S+ ++ L
Sbjct: 747  IHTIEFVLGCVS--HTASYLRLWALSLAHAQLS-DVLWTMVLRMSLTMGGWGGSAAITIL 803

Query: 326  MNFIFNTQGLTTSLSFSLTAVYLYSTMLRW 415
              FIF+   +   +     + +L++  L W
Sbjct: 804  FYFIFSILSVCILILMEGLSAFLHAIRLHW 833


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,161,923
Number of Sequences: 27780
Number of extensions: 346492
Number of successful extensions: 1031
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)