Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0208
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    27   0.18 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.71 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.71 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   8.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.8  

>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 17/77 (22%), Positives = 35/77 (45%)
 Frame = +2

Query: 116 RVMVLCFTARIINLIQFFVQSVATLYTSSLRSCWFILLQHTVCGIHSVSCLVLREPIYGG 295
           R + +   A++++L++    S    Y S     +F+ +      I ++ C++L    + G
Sbjct: 203 RALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYFLNMASVFMRIFNLICMMLLIGHWSG 262

Query: 296 CIASSLVSALMNFIFNT 346
           C+   LV  L  F  N+
Sbjct: 263 CL-QFLVPMLQGFPSNS 278


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = +3

Query: 168 LYKVSPLYTLVAYVAVGLFCYSILFVVFIL 257
           ++K++P++  + Y    L C++ ++ + IL
Sbjct: 90  VFKIAPIFKGIGYATCVLSCWTNIYYIIIL 119


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = +3

Query: 168 LYKVSPLYTLVAYVAVGLFCYSILFVVFIL 257
           ++K++P++  + Y    L C++ ++ + IL
Sbjct: 143 VFKIAPIFKGIGYATCVLSCWTNIYYIIIL 172


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 56  LYNFKKSKRWRYRNEAY 106
           +Y+F+ S+ WR  N  +
Sbjct: 210 VYDFRNSRSWRITNNLF 226


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 222 INQQLRKLLVYKVATLCTKN 163
           +NQ ++K L  ++ T C KN
Sbjct: 322 LNQDVQKKLREEINTFCPKN 341


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +2

Query: 296 CIASSLVSALMNFIFNTQGLTTSLSFS-LTAVYLYSTMLRWSLTKFPKTY-TIGEAMIVT 469
           C+  S +S L+ ++ +  G   SLS S L ++ ++  +L   +     T   +G+ ++ T
Sbjct: 247 CVGISFLSVLVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFT 306

Query: 470 QGLTLFTIAV 499
             L   ++ V
Sbjct: 307 MVLVTLSVVV 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,551
Number of Sequences: 438
Number of extensions: 4179
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)