Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0208
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45040.1 68416.m04852 phosphatidate cytidylyltransferase fami...    32   0.43 
At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam...    29   3.1  
At2g33160.1 68415.m04063 glycoside hydrolase family 28 protein /...    29   4.0  
At1g09380.1 68414.m01049 integral membrane family protein / nodu...    29   4.0  
At3g61680.1 68416.m06912 lipase class 3 family protein contains ...    27   9.3  

>At3g45040.1 68416.m04852 phosphatidate cytidylyltransferase family
           protein weak similarity to SP|P20048 Dolichol kinase (EC
           2.7.1.108) {Saccharomyces cerevisiae}; contains Pfam
           profile: PF01148 phosphatidate cytidylyltransferase
          Length = 569

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +2

Query: 248 IHSVSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLTAVYLYST--MLRWSL 421
           + S S  + R  + G  +        ++ I +T GL TSL       +  +   ++R  L
Sbjct: 138 LSSSSIWLTRVSLTGTVLYGVACFVSLSMISHT-GLNTSLKMLWMLFHGLAAVKLIRHLL 196

Query: 422 TKFPKTYTIGEAMIVTQGLTLF 487
             FP   +IGEA++VT GL L+
Sbjct: 197 CTFPSCASIGEALLVTSGLVLY 218


>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 794

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 159 YNFLYKVSPLYTLVAYVAVGLFCYSILFVVFILYHVWY 272
           + ++  + PLY+L  +VAV LF Y+     +  Y V Y
Sbjct: 425 HQYMENIFPLYSLFGFVAVHLFMYAADIYFWSRYRVNY 462


>At2g33160.1 68415.m04063 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Salix gilgiana] GI:6714524; contains
           Pfam profile PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 664

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 517 YSWPSNNCNGE*S-QTLCYNHGFSY 446
           YSWP N+CN   + +TL  N GF++
Sbjct: 135 YSWPLNDCNKNTNCRTLAMNIGFAF 159


>At1g09380.1 68414.m01049 integral membrane family protein / nodulin
           MtN21-related similar to MtN21 GI:2598575 (root nodule
           development) from [Medicago truncatula]
          Length = 374

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
 Frame = +2

Query: 173 QSVATLYTSSLRSCWFILLQHTVCGI---HSVSCLVLREPI------YGGCIASSLVSAL 325
           ++ A  YTS+L  C    +Q     +   H++S   L  P+      Y G +AS+L   L
Sbjct: 209 ETFAAPYTSTLLMCLMGSIQCGAIALISDHTISDWSLSSPLRFISALYAGVVASALAFCL 268

Query: 326 MNFIFNTQG-LTTSLSFSLTAVYLYSTMLRWSLTKFPKTYT---IGEAMIV 466
           M++    +G L  S+   L  V +   +  W+L +  K YT   +G A++V
Sbjct: 269 MSWAMQRKGPLYVSVFSPLLLVVV--AIFSWALLE-EKLYTGTFMGSALVV 316


>At3g61680.1 68416.m06912 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +2

Query: 248 IHSVSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLTAVYLYSTMLRWSLTK 427
           IHS     L EPIY    A+   ++ M  +    G    L  +     L S+   W +  
Sbjct: 288 IHSCKEYDLSEPIYKSAAAAQAAASTMTAVV-AAGEEEKLEAARELQSLQSSPCEWFVCD 346

Query: 428 FPKTYT 445
            P TYT
Sbjct: 347 DPNTYT 352


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,870,070
Number of Sequences: 28952
Number of extensions: 306567
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)